Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0577
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 34 0.064
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697... 29 3.2
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 4.2
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 28 4.2
01_03_0281 - 14570635-14574633 28 4.2
04_04_1460 + 33764106-33764303,33764675-33766201 28 5.5
11_08_0019 + 27697918-27698609,27701107-27701372,27701778-277019... 27 7.3
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 27 7.3
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 27 7.3
04_04_1553 - 34363848-34366058,34369087-34370451 27 9.7
04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509... 27 9.7
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 34.3 bits (75), Expect = 0.064
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 448 PN*ECSGENEEFTNCTNPCP-PRTCNSLVAR-FDCSKPKPCEEGCACKPD 305
P +C + +C P P P+ C+ + C KPKPCE+ CKP+
Sbjct: 97 PPEDCKPKPCHCCSCEKPKPKPKPCHCEKPKPCHCEKPKPCEKPPPCKPE 146
>02_04_0581 -
24068122-24068355,24068693-24068906,24069675-24069755,
24069853-24070024,24070806-24070884,24071384-24071477,
24072065-24072147,24072284-24072401,24072457-24072461
Length = 359
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -3
Query: 355 DCSKPKPCEEGCACKPDYLKLDDNSACVKIC 263
+CS C++ C C+ Y+ N C +C
Sbjct: 55 NCSADSTCKDDCECRGLYMSCSKNCHCSDMC 85
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 274 VKICECPQMASSPDCPKL 221
++I +CP++A PDCP L
Sbjct: 1701 LRISDCPKLAGIPDCPVL 1718
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 352 CSKPKPCEEGCACKPDYLKLDDNSACVKICECPQMASS 239
C + PC AC L + + C K C CP+M +
Sbjct: 645 CRQYTPCGCQSACGKQCPCLTNGTCCEKYCGCPKMCKN 682
>01_03_0281 - 14570635-14574633
Length = 1332
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -3
Query: 469 CVARENCPN*ECSGENEEFTNCTNPCP-PRTCNSLVARFDCSKPKPCEEGCACKPDYLKL 293
C EN P+ GE+ +F + P P N + K +E +P + +L
Sbjct: 865 CSNLENFPDAVIFGESSQFLDNKGNSPFPALKNLKLHNLKSLKAWGTQE--RYQPIFPQL 922
Query: 292 DDNSACVKICECPQMASSPDCPKL 221
++ I ECP++A+ P+ PKL
Sbjct: 923 EN----ANIMECPELATLPEAPKL 942
>04_04_1460 + 33764106-33764303,33764675-33766201
Length = 574
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 217 CKVKLKIIWISKTLFYIFSS*LRNYSHIKVL 125
C VK+ +WIS +++I + L NY+ ++ L
Sbjct: 320 CLVKIVPVWISGVMWFISVAELTNYTFLQAL 350
>11_08_0019 +
27697918-27698609,27701107-27701372,27701778-27701948,
27702187-27703166,27703723-27703804,27704148-27704170
Length = 737
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 511 CVCKEGYLKDDSGKCVARENCPN*ECSGENEEFTNCTNPCPPRTCNSLVARFDC 350
C C +GY G E C + E + T NPCP TC++L + C
Sbjct: 302 CNCSDGY----HGNPYLPEGCID---INECDPSTYKENPCPGGTCHNLEGGYKC 348
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -3
Query: 538 VDQKSCKAGCVCKEGYLKDDSGKCVARENCPN*ECSGENEEFTNCTNPCPPRTCNSLVAR 359
V+++ + + KE L ++ + VAR+N P+ E N + P ++L+AR
Sbjct: 177 VNRQRSRHQSLTKEQRLDMNARRRVARQNMPDVEIHDMNARLRSRRQSVTPGERSALLAR 236
Query: 358 ----FDCSKPKPCEEGCA 317
+ + KPC E A
Sbjct: 237 RNALYAARRDKPCAESIA 254
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 382 TCNSLVARFDCSKPKPCEEGCACKPDYLKLDDNSACVKICECPQMASSP 236
TC+ VAR+ C+ C +G P YLK +D +C I EC + P
Sbjct: 239 TCD--VARYRCN----CSQGFHGNP-YLKPEDPDSCQDIDECKEPYKYP 280
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 423 MKSLPTARTHVRRVLAIHSSLVLIVVSPNPAKRDALANQ 307
++S R +RR A+H+ LV+ +PA LANQ
Sbjct: 21 LRSCSPRRAVLRRARAVHALLVVSSTPSSPALTTFLANQ 59
>04_01_0385 -
5095410-5095445,5095595-5095796,5095905-5095979,
5096460-5096484,5097032-5097137
Length = 147
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 274 HRPNCRRVSSSLVCKRIPLRRVWAYYNQNERRVNCK 381
HR +CR V S+ V P + Y +QN R NCK
Sbjct: 56 HR-SCRCVKSNCVKLYCPCFSAYGYCSQNCRCTNCK 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,281,328
Number of Sequences: 37544
Number of extensions: 269754
Number of successful extensions: 737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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