Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0577
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    36   4e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    36   4e-04
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.7  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   8.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 529 KSCKAGCVCKEGYLKDDSGKCVARENC 449
           K C  GCVC+ GYL++    CV R  C
Sbjct: 65  KICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 424 NEEFTNCTNPCPPRTCNSLVARFDCSKPKPCEEGCACKPDYLKLDDNSACVKICEC 257
           NE F+ C   C  R C ++V +  C K   C  GC C+  YL+ +    CV   +C
Sbjct: 40  NEIFSRCDGRCQ-RFCPNVVPKPLCIKI--CAPGCVCRLGYLR-NKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 529 KSCKAGCVCKEGYLKDDSGKCVARENC 449
           K C  GCVC+ GYL++    CV R  C
Sbjct: 65  KICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 424 NEEFTNCTNPCPPRTCNSLVARFDCSKPKPCEEGCACKPDYLKLDDNSACVKICEC 257
           NE F+ C   C  R C ++V +  C K   C  GC C+  YL+ +    CV   +C
Sbjct: 40  NEIFSRCDGRCQ-RFCPNVVPKPLCIKI--CAPGCVCRLGYLR-NKKKVCVPRSKC 91


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 508 VCKEGYLKDDSGKCVARENCPN*ECSGENEEFTNCTNPCPP 386
           +C EG ++    KC+         CS E  E +  +NPC P
Sbjct: 78  ICAEG-MQCSCNKCIG--------CSAEKFECSKTSNPCLP 109


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 325 GCACKPDYLKLDDNSACVKICECP 254
           GC CKP Y    +   C    ECP
Sbjct: 246 GCHCKPGYQADVEKQECT---ECP 266



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 22/93 (23%), Positives = 36/93 (38%)
 Frame = -3

Query: 514 GCVCKEGYLKDDSGKCVARENCPN*ECSGENEEFTNCTNPCPPRTCNSLVARFDCSKPKP 335
           GC CK GY  D     V ++ C   EC     +    ++ C     +S  + +  ++   
Sbjct: 246 GCHCKPGYQAD-----VEKQECT--ECPIGKFKHEAGSHSCEACPAHSKSSDYGFTE--- 295

Query: 334 CEEGCACKPDYLKLDDNSACVKICECPQMASSP 236
               C C P Y + + +    K   C Q  S+P
Sbjct: 296 ----CRCDPGYFRAEKDP---KKMPCTQPPSAP 321



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = -1

Query: 402  RTHVRRVLAIHSSLVLIVVSPNPAKRDALANQTT*NSTTIRPVLRFANVRKWLALLTVQN 223
            RTH      +  +L  ++ SP+  ++ A    T   +     + +  +V +WLA + +  
Sbjct: 879  RTHRPTFANLTQTLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLTSVSEWLASIKMSR 938

Query: 222  Y 220
            Y
Sbjct: 939  Y 939


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 520 KAGCVCKEGYLKD 482
           K GC+C++   KD
Sbjct: 76  KVGCICRKTSFKD 88


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 81  INIFVYLWMSCTIF*STF 134
           +N  +++W+SC+ F   F
Sbjct: 409 VNAGMWMWLSCSSFFQQF 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,478
Number of Sequences: 438
Number of extensions: 3015
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)