Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0577
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32190.1 68414.m03959 expressed protein 32 0.22
At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)... 32 0.28
At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)... 32 0.28
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 1.1
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15... 29 2.7
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15... 25 3.2
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 28 3.5
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 28 3.5
At5g33210.1 68418.m03923 zinc finger protein-related similar to ... 27 6.1
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral... 27 6.1
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,... 27 6.1
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 27 8.1
At2g42000.1 68415.m05195 plant EC metallothionein-like family 15... 27 8.1
At1g75430.1 68414.m08762 homeodomain-containing protein contains... 27 8.1
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 32.3 bits (70), Expect = 0.22
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Frame = -3
Query: 436 CSGENEEFTNCTNP-CPPRTCNSLVARFDCSKPK---PCEEGC-AC--KPDYLKLDDNSA 278
CSG +C P CP +C+ DC K P +GC +C KP + +S
Sbjct: 297 CSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCV----SSC 352
Query: 277 CVKICECPQMASSPDCPKL*CKVKLK 200
C +C P CPK C LK
Sbjct: 353 CCPTFKCSSCFGKPKCPKCSCWKCLK 378
>At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)
identical to Metallothionein-like protein 1C (MT-1C).
(SP:Q38804) (Arabidopsis thaliana)
Length = 45
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 352 CSKPKPCEEGCACKPDYLKLDDNSACVKICEC 257
C C + C+C+ +Y K DN +C C C
Sbjct: 8 CGSSCKCGDSCSCEKNYNKECDNCSCGSNCSC 39
>At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)
(MT-Q) (MT-2) identical to Metallothionein-like protein
1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis
thaliana)
Length = 45
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 352 CSKPKPCEEGCACKPDYLKLDDNSACVKICEC 257
C C + C+C+ +Y K DN +C C C
Sbjct: 8 CGSSCKCGDSCSCEKNYNKECDNCSCGSNCSC 39
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 239 RASHLRTFANLNTGRIVVEFQVVWFASASLFAGFGLTTIKTSDE 370
RA HL+ F + +TG VV +V++ + +G+G + KT +
Sbjct: 201 RAKHLKEFFDADTGN-VVSTEVIFHENPRRSSGYGFVSFKTKKQ 243
>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 84
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Frame = -3
Query: 406 CTNPCPP-RTCNSLVARFDCSKPK----PCEEGCACKPDYLKLDDNSACVKICECPQMAS 242
C +PCP +C +++ + PC E C C P K C C + +
Sbjct: 19 CPSPCPGGESCRLMMSEASGGDQEHNTCPCGEHCGCNPCNCPKTQTQTSAKGCTCGEGCT 78
Query: 241 SPDC 230
C
Sbjct: 79 CATC 82
>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 85
Score = 25.4 bits (53), Expect(2) = 3.2
Identities = 10/36 (27%), Positives = 12/36 (33%)
Frame = -3
Query: 337 PCEEGCACKPDYLKLDDNSACVKICECPQMASSPDC 230
PC E C C P K C C + + C
Sbjct: 48 PCGEHCGCNPCNCPKTQTQTSAKGCTCGEGCTCATC 83
Score = 21.8 bits (44), Expect(2) = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -3
Query: 382 TCNSLVARFDCSKPKPCEEGCACK 311
+CN R C P P E C CK
Sbjct: 12 SCND---RCGCPSPCPGGESCRCK 32
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 412 TNCTNPCPPRTCNSLVARFDCSKPKPCEEGCACKP 308
TNC C R+C V CSK C E C +P
Sbjct: 288 TNCGPNCD-RSCVCRVQCISCSKGCSCPESCGNRP 321
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -3
Query: 511 CVCKEGYLKDDSGKCVARENCPN*-ECSGENEEFTNCTNPCPPRTCNSLVARFDCSKPK- 338
C C EGY G E C + EC + NC++P +TC + FDC P
Sbjct: 275 CKCNEGY----DGNPYRSEGCKDIDECISDTH---NCSDP---KTCRNRDGGFDCKCPSG 324
Query: 337 -PCEEGCAC-KPDY 302
+C +P+Y
Sbjct: 325 YDLNSSMSCTRPEY 338
>At5g33210.1 68418.m03923 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01623: putative zinc
finger domain, LRP1 type
Length = 173
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 274 HRPNCRRVSSSLVCKRIP 327
HR N SSSLVC RIP
Sbjct: 119 HRENLPATSSSLVCTRIP 136
>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
root primordium (LRP) protein-related similar to lateral
root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702)
Length = 252
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 274 HRPNCRRVSSSLVCKRIP 327
HR N SSSLVC RIP
Sbjct: 211 HRENLPATSSSLVCTRIP 228
>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 360
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 447 GQFSRATHLPLSSFRYPSLHTHPALQDF 530
G + + THLP S+F YPS T A D+
Sbjct: 317 GTYVQLTHLPASTFAYPS-QTPSATVDY 343
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 409 NCTNPCPPRTCNSLVARFDCSKPKPCEEGCAC 314
N T P PP+ C S + F+ S PC+ CAC
Sbjct: 403 NITQPTPPKCCVSFSSYFNDS-VIPCKT-CAC 432
>At2g42000.1 68415.m05195 plant EC metallothionein-like family 15
protein 84 C-terminal residues identical to EC protein
homolog 1 (SP:P93746) {Arabidopsis thaliana}; contains
Pfam PF02068: Plant PEC family metallothionein profile;
Length = 115
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Frame = -3
Query: 406 CTNPCPP-RTCNSLVARFDCSKPK----PCEEGCACKPDYLKLDDNSACVKICECPQMAS 242
C +PCP +C + PC E C C P K C C + +
Sbjct: 50 CPSPCPGGNSCRCRMREASAGDQGHMVCPCGEHCGCNPCNCPKTQTQTSAKGCTCGEGCT 109
Query: 241 SPDC 230
C
Sbjct: 110 CASC 113
>At1g75430.1 68414.m08762 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 297
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 375 IHSSLVLIVVSPNPAKRDALANQTT*NSTTIRPVLRFANVRKWLALL 235
+H S+ L++ PN A++ LA+QT + + A VR W ++
Sbjct: 226 LHPSVFLLLNYPNEAEKLVLASQTGLSKNQVSNWFINARVRLWKPMI 272
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,984,043
Number of Sequences: 28952
Number of extensions: 227911
Number of successful extensions: 522
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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