Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0575
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    33   0.025
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   1.6  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   3.7  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   4.9  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   6.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   6.5  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    24   8.6  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.6  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 32.7 bits (71), Expect = 0.025
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = +1

Query: 88  IDRKMFK----THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 237
           +DRK F     T  +  GR+ +P    S+K R  +  +RS   S   R E+RYRPTRR
Sbjct: 190 LDRKRFHDASDTERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 22  ARPRHHTTLFNYDRYLTEYEHDIDRKMFKTH 114
           A PRH   LFN+  +      D+++K+  +H
Sbjct: 334 ASPRHLPELFNFSPFELSIRPDLNQKLIPSH 364


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 194 RKTSEPRKGTGQHAAA--FFPNSCRPTLTPSRFT 289
           ++T+  + GT  +A A  F PN   P  TP +FT
Sbjct: 415 KETTGTKLGTKLNAKAISFKPNVAAPVFTPGKFT 448


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +3

Query: 126 WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLLQVDLRRPYRC 305
           W+  D +   ++ AV+ A ++        G++  ++P R +  P+ + L  V   +    
Sbjct: 719 WETPD-IRVMRVKAVMPANNRAAVLRIYAGRLGVSSPVRTAPHPMAMSLPFVHHGKNKAL 777

Query: 306 R*EDYGTRLPLPACPSRDL 362
              ++ TR P+P CPS DL
Sbjct: 778 ---EFVTRHPVPHCPSVDL 793


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 202 CLPNLLENARRTAKIWLSSTASRFCQSCLNV 110
           C   +L +AR   K WLSS  S      LN+
Sbjct: 157 CDEEILVDARNQIKNWLSSELSHSTSKYLNI 187


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 34   HHTTLFNYDRYLTEYEHDIDRKMFKTHLDMIGRNETPSKKARF 162
            H+      ++YL EY   + R   KTH   + + E+  K   F
Sbjct: 1151 HYAASVGQNKYLNEYVASLIRTNEKTHSTELSQKESGFKILEF 1193


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 17/82 (20%), Positives = 31/82 (37%)
 Frame = +2

Query: 167 SPSCVL*KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCL 346
           +PS  L      S  +           P+S +   T S FTT +++      +P T+   
Sbjct: 484 TPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSS 543

Query: 347 SIARSTATPRALSMPTTTLALS 412
           S   S+ +    +    + +LS
Sbjct: 544 SFQYSSLSSNVTTTNAQSSSLS 565


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 136 ETPSKKARFWQSFVRSLKGSED 201
           E P KK  FW S +    GS +
Sbjct: 423 EAPKKKKSFWASILSCCSGSNE 444


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 34  HHTTLFNYDRYLTEYEHDIDRKMFKTHL 117
           +  +L  YDRYL +  +D D +  K  L
Sbjct: 53  YQKSLETYDRYLLQCPNDFDARFNKARL 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,578
Number of Sequences: 5004
Number of extensions: 36568
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)