Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0575
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0282 - 2088302-2089081                                           28   3.6  
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955...    28   3.6  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    28   3.6  
05_03_0160 - 9044194-9044432,9045361-9045562,9046307-9046411,904...    27   4.8  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    27   4.8  
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303...    27   6.3  
10_08_0739 + 20217842-20218852                                         27   8.3  

>12_01_0282 - 2088302-2089081
          Length = 259

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 252 TPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPGPYLCP-QLPSLSR 413
           TP+      V L  P+  R     T LPL A    +LRL+PG  L P   P +SR
Sbjct: 44  TPLPTSTTVVILHHPHALRRNPLST-LPLLARSLSNLRLIPGRRLLPSSAPVISR 97


>05_05_0029 +
           21694448-21694567,21694666-21695117,21695214-21695529,
           21695863-21697122
          Length = 715

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 52  NYDRYLTEYEHDID-RKMFKTHLDMIGRNETPSKKARFWQSFVRSLKGS 195
           N DRY  EYE D +  ++ +   ++IG+ E      R W+    + + S
Sbjct: 246 NDDRYSVEYEKDGEMERVLEKQAELIGQYEAEEYAQREWEKKFNNCRDS 294


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 183 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 308
           SKR  +HQ+R      T +R F R PV LP  ++  +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802


>05_03_0160 -
           9044194-9044432,9045361-9045562,9046307-9046411,
           9046523-9046897,9046956-9047208,9047349-9047563
          Length = 462

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 26/97 (26%), Positives = 42/97 (43%)
 Frame = +1

Query: 31  RHHTTLFNYDRYLTEYEHDIDRKMFKTHLDMIGRNETPSKKARFWQSFVRSLKGSEDIRA 210
           R   T  +   ++T+ +H I  K     LD I ++      A F  SF++ L+  ED+ A
Sbjct: 53  RRRITDLSVQGWVTKLKHTIRIKALNARLDAICKSA-----ATF--SFLK-LESYEDMVA 104

Query: 211 EERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERIT 321
             R+    R   P L  +    + I +D  A   R+T
Sbjct: 105 PRRFSVANRRTDPVLEQSAVVGEKIKEDTRALVRRLT 141


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +1

Query: 220  YRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSP-GPIYAHN 396
            Y PT  +  P   S  P S S    P + +   T P Y Y P       YSP  P Y  N
Sbjct: 1683 YNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSP---SYSPTSPSY--N 1737

Query: 397  YPRSLDYYRP 426
            Y  +   Y P
Sbjct: 1738 YSPTSPSYSP 1747


>02_03_0138 -
           15629421-15629440,15629521-15629752,15630115-15630348,
           15630486-15630709,15631225-15631509,15631549-15631690
          Length = 378

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 133 NETPSKKARFWQSFVRSLKGSEDIRAEER 219
           +E  +++   WQ+F+  +KG E+   EE+
Sbjct: 135 HELATRQVECWQAFLSPMKGKEEDEGEEK 163


>10_08_0739 + 20217842-20218852
          Length = 336

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = +3

Query: 234 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPGPYLCPQLPSLS 410
           P   S     LP     +  P+R          PLP  PS  L L+P     P LP L+
Sbjct: 26  PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLA 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,025,906
Number of Sequences: 37544
Number of extensions: 261685
Number of successful extensions: 841
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)