Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0575
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.70 
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               30   0.92 
SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)                    29   1.6  
SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)                   28   3.7  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_31811| Best HMM Match : Keratin_B2 (HMM E-Value=0.029)              27   4.9  
SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)                    27   6.5  
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          27   6.5  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_45629| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      27   8.6  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)                  27   8.6  
SB_14188| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 126  WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLP 269
            W+ RD+  +S I AVL    KR   ++ R K   N  ++FS      P
Sbjct: 4708 WKSRDSDSDSSIDAVLDEMEKRRAGYEDRRKSFENLKRKFSEPSCTSP 4755


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +1

Query: 202 IRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAA---AERITVPGYRYLPVHREIYGYS 372
           I+ E++ +P  RS  P  LST P+   +    +      E + +P  +Y P+       S
Sbjct: 197 IQQEQQSQPEHRSCSP-CLSTEPHHTPLSPSRVETHSHKEGVQLPIQQYQPIQTRRRSQS 255

Query: 373 PGPIYAHNYPRS 408
           PG  YA    RS
Sbjct: 256 PGQTYATKRGRS 267


>SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 60  PLFNRIRARHRPQNVQNTFRH--DWQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANT 233
           PL   ++ +H P  ++NT ++    +K+   +   I+ + R  S+    H+   +   NT
Sbjct: 106 PLHTTLKKKHSPTKLENTRKNTKGIEKKPISDAEAIINITRLASEAL--HKLSEEEDLNT 163

Query: 234 PQRFSRTPVDLP 269
             ++  T +DLP
Sbjct: 164 CPKYGVTKIDLP 175


>SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 124 SCLNVF*TFCGLCRARIRLNNGRN*IG*CGVVDEPLVPNSC 2
           +CLN   ++   C    RL+      G C  +DE LVP SC
Sbjct: 254 TCLNALGSYACQCEPGFRLDRTLGLSGVCVDMDECLVPGSC 294


>SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 714

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 66  FNRIRARHRPQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRF 245
           F RIR  +  + ++  F   +   +  E  +    L  F+K+   H+++  + A    R 
Sbjct: 150 FERIRVWNELREIRRVFVPSYIPGNTSEAQRTNNKLLTFNKQRLPHENKEAIGAQDKGRE 209

Query: 246 SRTPVDLPL 272
           S +PV LPL
Sbjct: 210 SSSPVSLPL 218


>SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 213 GKVQANTPQRFSRTPVDLPLLQVDLRRP-YRCR*EDYGTRLPLPACPSRDLRLLPGPYLC 389
           GK+  +   +   +  D  +L+  +RR  YR R  D+    P P    RD  L  G  + 
Sbjct: 190 GKLNVSKNSKLESSQTDEDILRKYMRRTCYRVRNRDFAH--PAPTKMERDFPLAFGIMIY 247

Query: 390 PQLPSLSRLLQ 422
             LP   RLLQ
Sbjct: 248 NGLPLFERLLQ 258


>SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)
          Length = 293

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 66  FNRIRARHRPQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRF 245
           F RIR  +  + ++  F   +   +  E  +    L  F+K+   H+++  + A    R 
Sbjct: 31  FERIRVWNELREIRRVFVPSYIPGNTSEAQRTNNKLLTFNKQRLPHENKEAIGAQDKGRE 90

Query: 246 SRTPVDLPL 272
           S +PV LPL
Sbjct: 91  SSSPVSLPL 99


>SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 138 DAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLL 275
           D  E+ +    +R F++ +GR   +  V+ANT +     P  L +L
Sbjct: 147 DETEDRRRAETMREFTREYGRGVRQANVRANTKKLTGTLPYSLSML 192


>SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 269 LTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 409
           L P RF +   L  R  R+P  ++  S   ST   R  S P +  +L
Sbjct: 346 LNPKRFWSIFKLKSRDFRFPGIMSIGSAENSTQPARLASTPASIASL 392


>SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)
          Length = 213

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 216 KVQANTPQRFSRTPVDLPLLQVDLR 290
           KV AN P +F RTP+   +L+ D+R
Sbjct: 140 KVDANLPGQFGRTPLHNAVLKGDMR 164


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 287  TTTLSLPLRGL--RYPATVTCLSIARSTATPRALSMPT-TTLALSII 418
            TT  SLP   +    PATV+  SIA S  TP + S  T TTL  S++
Sbjct: 1169 TTIYSLPPTSMLNSTPATVSIDSIAPSPTTPPSSSSTTITTLNASVM 1215


>SB_31811| Best HMM Match : Keratin_B2 (HMM E-Value=0.029)
          Length = 138

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 254 SCRPTLTPSRFTTTLSLPLRGLRYPATVTC--LSIAR--STATPRAL 382
           SCRP       ++    PL  +RY ++ TC  L +AR  S+AT R L
Sbjct: 61  SCRPLHVVRYMSSATCRPLHVVRYMSSATCRPLHVARFMSSATCRTL 107


>SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)
          Length = 698

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 171 LRAFSKRFGRHQSRG-KVQANTPQRFSRTPVDLPLLQVDLRRPYRCR 308
           L+ +SKRFGR  +RG +V+       +R+ +   L+ VD+    +CR
Sbjct: 118 LQRYSKRFGRADTRGIRVKNMLHGTGTRSIIRYTLMYVDVLVSAQCR 164


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 67  LTEYEHDIDRKMFKTHLDMIGRNE--TPSKKARFWQSFVRSL--KGSEDIRAEERY 222
           L +Y H   R + + +L+++GR+   TP+       SF   L  K  E +R++ RY
Sbjct: 697 LCKYFHTSSRNLSEKYLEVLGRHNYVTPTSYLELISSFKTLLGRKQDEVLRSKRRY 752


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 311  RGLRYPATVTCLSIARSTATPRALSMPTTTLALS 412
            +GL+   + T L ++R  A+PRALS+    ++ S
Sbjct: 1174 QGLKDERSTTPLGLSRKAASPRALSLSPKPISTS 1207


>SB_45629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 166 QSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSI 285
           QS+++S  G E I   + Y    RS+F EL    P+  ++
Sbjct: 141 QSYLKSGPGVEYIPLRDYYHRHTRSIFWELQDIIPFGNNV 180


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 266  TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIIT 421
            T T S  +   S+      + A  T      ST+TP A    TTT A+S  T
Sbjct: 2235 TATGSSTSVPQSIATAPFVFGAATTTAEALTSTSTPFAFGAATTTAAISTST 2286



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 272  TPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALS 412
            T +   T+ S P     + A  T  +I+ ST+TP A   P T  A+S
Sbjct: 2259 TTAEALTSTSTPFA---FGAATTTAAISTSTSTPFAFGAPATAAAVS 2302


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 161  NLAFFDGVSFLPIMSKCVLNILRSMSCSYSVK 66
            N+A    +S L  M  C+LNI R ++ S+S K
Sbjct: 2860 NIARLVTLSHLAKMGACILNIARLVTLSHSAK 2891


>SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)
          Length = 700

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 141 AVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLLQVDLRRPYR 302
           +VEE  ++A+LRAFSK    + S+ K   NT   F    ++  L +   + P R
Sbjct: 349 SVEEKSLIAMLRAFSKDMEVNISKEK--KNTKDMFKIHVIEQVLKRCQEKYPKR 400


>SB_14188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 161 NLAFFDGVSFLPIMSKCVLNILRSMSCSYSVK 66
           N+A    +S L  M  C+LNI R ++ S+S K
Sbjct: 102 NIARLVTLSHLAKMGACILNIARLVTLSHSAK 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,749
Number of Sequences: 59808
Number of extensions: 304538
Number of successful extensions: 1016
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)