Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0575
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16190.1 68417.m02457 cysteine proteinase, putative contains ...    30   0.57 
At4g01090.1 68417.m00147 extra-large G-protein-related contains ...    29   1.3  
At5g23910.1 68418.m02808 kinesin motor protein-related                 29   1.7  
At5g55540.1 68418.m06919 expressed protein                             28   2.3  
At1g67170.1 68414.m07641 expressed protein similar to enterophil...    28   2.3  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    27   7.0  
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte...    27   7.0  
At2g04030.2 68415.m00372 heat shock protein, putative strong sim...    27   7.0  
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit...    27   7.0  
At5g58410.1 68418.m07314 expressed protein contains similarity t...    26   9.3  

>At4g16190.1 68417.m02457 cysteine proteinase, putative contains
           similarity to papain-like cysteine proteinase isoform I
           GI:7381219 from [Ipomoea batatas]
          Length = 373

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 34  HHTTLFN--YDR-YLTEYEHDIDRKMFKTHLDMIGRNE 138
           HH TLF   Y++ Y T+ EHD   ++FK +L    RN+
Sbjct: 53  HHFTLFKSKYEKTYATQVEHDHRFRVFKANLRRARRNQ 90


>At4g01090.1 68417.m00147 extra-large G-protein-related contains
           weak similarity to extra-large G-protein [Arabidopsis
           thaliana] gi|3201682|gb|AAC19353
          Length = 714

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 343 PVHREIYG-YSPGPIYAHNYPRSLDYYRP 426
           PVH   +  ++PGP Y H YP  + Y  P
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGP 144


>At5g23910.1 68418.m02808 kinesin motor protein-related 
          Length = 665

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 278 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 409
           S+ T  L   L+G      +TCL++ R   T R   + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 251  SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 153
            SGKT+ R G  L+  L+S + FRE    R  D  NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093


>At1g67170.1 68414.m07641 expressed protein similar to
           enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
           to Hyaluronan mediated motility receptor (Intracellular
           hyaluronic acid binding protein) (Receptor for
           hyaluronan-mediated motility) (CD168 antigen)
           (Swiss-Prot:O75330) [Homo sapiens]
          Length = 359

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = +1

Query: 121 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 300
           ++ R E  SK  +  Q   +S    + I A        R  + +  +TY Y K  Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209

Query: 301 AAAERITVPGYRYLPVHREI 360
              E +      Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 191 VRKTSEPRKGTGQHAAAFFPNSCRPTL 271
           V KT  P+ G G H+A   P   RP+L
Sbjct: 295 VPKTPPPKNGAGLHSAPSTPAGGRPSL 321


>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
           protein, Arabidopsis thaliana
          Length = 632

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 188 KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSR 283
           K++KT+EP  GTG        NS  PTL P R
Sbjct: 394 KLQKTAEPCHGTGVENEM---NSLTPTLKPCR 422


>At2g04030.2 68415.m00372 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 777

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 94  RKMFKTHLDMIGRNETPSKKARFWQSFVRSLKGS--EDIRAEERYRPTRR 237
           +++ +   DMI        K +FW++F R LK    ED    +R  P  R
Sbjct: 455 KRLIRKTFDMIQEISESENKEKFWENFGRFLKLGCIEDTGNHKRITPLLR 504


>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity to
            DNA Helicase recQl4B [Arabidopsis thaliana] GI:11121451;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00570:
            HRDC domain
          Length = 1024

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 317  LRYPATVTCLSIARSTATPRALSMPTTTLALS 412
            +R+P+T+     ++STA P  + +  TTL ++
Sbjct: 928  MRFPSTIKVSKQSKSTANPAKVPLKQTTLPMA 959


>At5g58410.1 68418.m07314 expressed protein contains similarity to
           hypothetical proteins
          Length = 1873

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 173 KDCQNLAFFDGVSFLPIMSKCVLNILRSMS 84
           K  +NL   + VS+L  + +C+L IL  ++
Sbjct: 494 KSAENLGMGNSVSYLQELGRCILEILSGIN 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,357,037
Number of Sequences: 28952
Number of extensions: 196359
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)