Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0574
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    40   3e-04
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    30   0.19 
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    27   2.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.5  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   5.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.3  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.6  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLL 76
           NKDG+L+LEEF EG+K DP+IV  L
Sbjct: 159 NKDGQLTLEEFCEGSKRDPTIVSAL 183


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -1

Query: 333 LCLFVSIATIDLY*YIQNERATKQQDSRPFGPVVQQTLTLRTSS*KHSN 187
           L ++ SI +  +  YIQNE + K+ D  PF  + +   TL++SS K  N
Sbjct: 193 LLIYQSIKSRLVERYIQNEESVKRPDKSPFDTMTE--ATLQSSSDKSEN 239


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 21  PSRSS*KEPRATLLLYGCSNVIPNLSDIRNIN 116
           PS  + +     L L G SNV+PN++D   ++
Sbjct: 564 PSSGNFESINVMLALRGLSNVVPNITDAEGVS 595


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 193 VLLRASAQCESLLHNRSERTAVLLLGCPLVLNIL 294
           +LLR    C+ LL +      + LL C  +LN+L
Sbjct: 391 ILLRKKEDCKKLLEHVLPIRQLFLLNCYSLLNVL 424


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 246 TDGCPAAWLPSRFEYININRSSLSIQKDR 332
           T+G  A WL    EY+N +    S++ D+
Sbjct: 55  TEGTLAQWLKQPGEYVNKDEEIASVETDK 83


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 272 QPSSRTAVRSDRLCNKLSHC 213
           QP  R  VR   LCNKL  C
Sbjct: 689 QPCYRENVRCGELCNKLLSC 708


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 128 ALNHSIYPHV*TYCNIKSPL 187
           + NH + PHV  +C+++S L
Sbjct: 344 SFNHQMIPHVSQFCHVRSYL 363


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 115 LIFRISLRLGITLEQPYNRRVALGSFYELLE 23
           L+ RISL  G+ LEQ +  + AL  F + +E
Sbjct: 426 LLIRISLTGGLRLEQDHACKHALPQFLQTVE 456


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 173 YYNKFIRVDRSSDSMLEGDINISYITE 93
           YY   + +DRSS+  L+G    SYI E
Sbjct: 575 YYCSDLLLDRSSEIGLDGTYLFSYIPE 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,441
Number of Sequences: 5004
Number of extensions: 40023
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)