Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0574
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223...    29   1.8  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    28   5.6  
03_03_0220 - 15550944-15551090,15551169-15551219,15551364-155515...    27   9.8  
02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270     27   9.8  

>06_01_0308 +
           2229025-2229260,2229448-2230145,2230377-2230469,
           2230815-2231992
          Length = 734

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 291 YIQNERATKQQDSRPFGPVVQQTLTLRTSS*KHSNKGDF 175
           Y+Q  + T++ D   FG V+ + +T + +  +H   GDF
Sbjct: 581 YLQERKLTEKSDVYSFGVVLLELITGKKAIYRHDGDGDF 619


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 446 CITLFIHS----PLSRSLFEQVNRH*VNYTYRYF*YTINLMVSVFL 321
           C++  +H     P+  +L +++N+H   + +  F  T+N +V++ L
Sbjct: 797 CLSFLMHKIQPPPMGENLIQEINKHIERHLHNQFPRTLNQLVNIDL 842


>03_03_0220 -
           15550944-15551090,15551169-15551219,15551364-15551554,
           15551625-15551925,15552050-15552240,15553283-15553357,
           15555584-15555707
          Length = 359

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 388 LFTCSNNDRDKGL*INNVIQISSLYYKKKY 477
           +F C+++D +K L INNV  I   Y  K++
Sbjct: 120 IFFCASSDAEKVLDINNVKYIPEHYIMKRW 149


>02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270
          Length = 248

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 227 CCTTGPNGRLSC-CLVAL 277
           CC  GP  RLSC C++AL
Sbjct: 219 CCCFGPGERLSCRCILAL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,982
Number of Sequences: 37544
Number of extensions: 233690
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)