Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0574
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25)                59   2e-09
SB_23229| Best HMM Match : efhand (HMM E-Value=6.8e-25)                58   5e-09
SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)                44   1e-04
SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_10626| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_40601| Best HMM Match : VWA_CoxE (HMM E-Value=6.3)                  32   0.35 
SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)              32   0.35 
SB_26643| Best HMM Match : DUF922 (HMM E-Value=6.6)                    32   0.35 
SB_24135| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25)
          Length = 190

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/31 (87%), Positives = 28/31 (90%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLLQCDPQS 94
           N DGKLSL EFIEGAKSDPSIVRLLQCDP +
Sbjct: 159 NLDGKLSLAEFIEGAKSDPSIVRLLQCDPSN 189


>SB_23229| Best HMM Match : efhand (HMM E-Value=6.8e-25)
          Length = 191

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 27/31 (87%), Positives = 28/31 (90%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLLQCDPQS 94
           N DGKLSL EFIEGAKSD SIVRLLQCDPQ+
Sbjct: 159 NLDGKLSLAEFIEGAKSDESIVRLLQCDPQA 189


>SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)
          Length = 776

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSI 64
           N DGKLSLEEFIEGAKSDPSI
Sbjct: 159 NLDGKLSLEEFIEGAKSDPSI 179


>SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLL 76
           N DGKLS+EEF EG+K+DPSI++ L
Sbjct: 183 NNDGKLSMEEFREGSKADPSIIQAL 207


>SB_10626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLL 76
           ++DG LSL EF+EGAK D +I  +L
Sbjct: 69  DRDGVLSLTEFLEGAKRDKTIALML 93


>SB_40601| Best HMM Match : VWA_CoxE (HMM E-Value=6.3)
          Length = 666

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 90  WG---SHWSSRTIEGSLLAPSMNSSRESFPSLF 1
           WG   SH  SRT+ G LL+P    S  S P+LF
Sbjct: 146 WGDSFSHLESRTLHGQLLSPPKKQSYSSGPTLF 178


>SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)
          Length = 587

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 90  WG---SHWSSRTIEGSLLAPSMNSSRESFPSLF 1
           WG   SH  SRT+ G LL+P    S  S P+LF
Sbjct: 532 WGDSFSHLESRTLHGQLLSPPKKQSYSSGPTLF 564


>SB_26643| Best HMM Match : DUF922 (HMM E-Value=6.6)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 90  WG---SHWSSRTIEGSLLAPSMNSSRESFPSLF 1
           WG   SH  SRT+ G LL+P    S  S P+LF
Sbjct: 185 WGDSFSHLESRTLHGQLLSPPKKQSYSSGPTLF 217


>SB_24135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 45  PRATLLLYGCSNVIPNLSDIRNINITFEH*ITRSIH 152
           PR+ L  Y C N  PNL+ +  + I+    + R IH
Sbjct: 8   PRSRLFFYPCDNCKPNLNTVHGVPISTGRRVRRQIH 43


>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLLQCD 85
           NKDGKL+L+E  E  K + ++  + + D
Sbjct: 172 NKDGKLNLKELTELVKYNQTVAEIREAD 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,349
Number of Sequences: 59808
Number of extensions: 306545
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)