Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0574
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-2|AAA82363.2|  191|Caenorhabditis elegans Neuronal calciu...    38   0.005
L33680-1|AAA85631.1|  191|Caenorhabditis elegans neuronal calciu...    38   0.005
U55375-1|AAK82907.2|  199|Caenorhabditis elegans Neuronal calciu...    36   0.025
U41559-10|AAC24264.2|  371|Caenorhabditis elegans Hypothetical p...    27   8.8  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    27   8.8  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    27   8.8  

>U41030-2|AAA82363.2|  191|Caenorhabditis elegans Neuronal calcium
           sensor familyprotein 1 protein.
          Length = 191

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLL 76
           N D +L+LEEF EGAK+DPSIV  L
Sbjct: 159 NNDAQLTLEEFKEGAKADPSIVHAL 183


>L33680-1|AAA85631.1|  191|Caenorhabditis elegans neuronal calcium
           binding protein protein.
          Length = 191

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLL 76
           N D +L+LEEF EGAK+DPSIV  L
Sbjct: 159 NNDAQLTLEEFKEGAKADPSIVHAL 183


>U55375-1|AAK82907.2|  199|Caenorhabditis elegans Neuronal calcium
           sensor familyprotein 3 protein.
          Length = 199

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 2   NKDGKLSLEEFIEGAKSDPSIVRLLQCDPQS 94
           N DG+L+ EEF EG+K+DP IV+ L  D  S
Sbjct: 169 NLDGQLTREEFKEGSKADPWIVQALTMDISS 199


>U41559-10|AAC24264.2|  371|Caenorhabditis elegans Hypothetical
           protein C26B2.4 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 60  LLYGCSNVIPNLSDIRNINITFEH 131
           LL+GCSNV P  SD R I +  EH
Sbjct: 243 LLFGCSNVFPLKSD-RWIAVETEH 265


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 380 LSVCLLVRTTIVIKGCE*TTLYKFRRYITKKNIRV 484
           + +C ++ TT++  G E    YKF   I KK   V
Sbjct: 118 IPICFVLGTTLIKDGIEDYRRYKFDNQINKKTCHV 152


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 380 LSVCLLVRTTIVIKGCE*TTLYKFRRYITKKNIRV 484
           + +C ++ TT++  G E    YKF   I KK   V
Sbjct: 118 IPICFVLGTTLIKDGIEDYRRYKFDNQINKKTCHV 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,814,544
Number of Sequences: 27780
Number of extensions: 223489
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)