Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0573
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   0.34 
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    27   1.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   2.4  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   4.2  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    24   9.6  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 131 VEKPFNSDNPLYTLPSNT 78
           + KPF SD PLY+ P++T
Sbjct: 647 INKPFTSDRPLYSSPNDT 664


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 110 DNPLYTLPSNTSVDRNKCILNITTVNNCSN 21
           D PL  L S+T VD++KC L    +  C+N
Sbjct: 275 DEPLPELSSDTKVDQDKCAL----IKQCAN 300


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 137 LVVEKPFNSDNPLYTLPSNTS 75
           L  EKPF ++ PL +LP   S
Sbjct: 701 LTAEKPFTTEKPLSSLPEEVS 721


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 113 SDNPLYTLPSNTSV-DRNKCILNITTVNNCSNVLCTIS 3
           S N +  +PS++ +    K   +   V NCSN+LC ++
Sbjct: 29  SPNSVGAIPSSSPLASSTKASTSTPFVENCSNLLCDLA 66


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 137 LVVEKPFNSDNPLYTLPSNT 78
           LVV+   N DN + TL SNT
Sbjct: 46  LVVDDATNDDNSVITLSSNT 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,670
Number of Sequences: 5004
Number of extensions: 27893
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)