Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0573
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 147 RHCTHCIPQAETHYCFAAEIGRVVVTTA 230
           R C   +PQ E + C A  +   VV+ A
Sbjct: 29  RICDRSLPQKEYNQCIAEAVRDAVVSLA 56


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 219 VTTADSQGVLPPV 257
           V  AD +GV+PPV
Sbjct: 227 VRIADHRGVMPPV 239


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 219 VTTADSQGVLPPV 257
           V  AD +GV+PPV
Sbjct: 227 VRIADHRGVMPPV 239


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 7   IVQSTFEQLLTVVIFNMH 60
           ++  TF   +TVV+ N+H
Sbjct: 311 MILDTFSICVTVVVLNVH 328


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 343 WRFS*LL*YKRCIRYFTLF 399
           W+F+ ++  + C+  FTLF
Sbjct: 519 WKFAAMVIDRMCLIIFTLF 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,726
Number of Sequences: 438
Number of extensions: 1940
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)