Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0568
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   124   1e-29
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   6.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  124 bits (298), Expect = 1e-29
 Identities = 75/197 (38%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
 Frame = +2

Query: 5   FGTRHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXX 178
           F T  KDI  LY                    EL  PGS  L G+ Q+YN  ++AH    
Sbjct: 13  FSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILM 72

Query: 179 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 358
                         N LVPL++GAPD+A+PR+NN  F              + E G G G
Sbjct: 73  IFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGG 132

Query: 359 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 538
            TVYPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF 
Sbjct: 133 WTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFA 192

Query: 539 *AVGITAFLLLLSLPVL 589
            A+ IT+ LLLL+LPVL
Sbjct: 193 WAIMITSILLLLTLPVL 209


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 292 TPTPLPYIINFKKNCRKWCRNRMNS 366
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,820
Number of Sequences: 5004
Number of extensions: 28380
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)