Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0566
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   2.1  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.8  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    24   6.6  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   6.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   8.7  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    23   8.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    23   8.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    23   8.7  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 199 ILKGSLHSGFTLDEHAQQFTGSLSFT 122
           ++  SLH+ F  + HA   TG LS T
Sbjct: 897 VVVNSLHNYFFAEAHASSVTGVLSIT 922


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 221 LFVPPRKLRQECWSYLSLF 277
           +FVPP++    C +Y+ LF
Sbjct: 173 IFVPPKRSSSSCVTYVCLF 191


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 190 GSLHS--GFTLDEHAQQFTGSLSFTNSARSK 104
           GSL +  GFTLDE    FT S S  + A SK
Sbjct: 462 GSLETTNGFTLDERNLAFTLSNSVGHMAPSK 492


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 162 SNVNPLCNDPFNIRIDTGNSYLFRLENCDKN 254
           +N+N   N P    IDTG ++  R     KN
Sbjct: 429 NNINSEPNTPTKSNIDTGKAHSARAHKTRKN 459


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 178 SGFTLDEHAQQFTGSLSFT 122
           +GFT D+H+Q F  S + T
Sbjct: 760 NGFTTDQHSQTFIPSQTHT 778


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 96  PRNDSFAIMMHNKLTRLSENTERRLSF 16
           P++D FAI+  N     S N +  LSF
Sbjct: 466 PKSDRFAIISANDQVLNSTNVKTNLSF 492


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 184 LHSGFTLDEHAQQFTGSLSFTNSARSKTGT 95
           L  G T ++    F+G  S TN+  + TGT
Sbjct: 322 LFGGSTFNQQKPAFSGFGSTTNTTNTGTGT 351


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 272 RKGSSSILVAVFEAEQIRIPGVDTD 198
           R   SSI+V  F  E  +IPG+D D
Sbjct: 555 RLTKSSIIVQPFYNEWQQIPGLDDD 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,575
Number of Sequences: 5004
Number of extensions: 24716
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)