Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0566
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0214 + 13141213-13143741 29 0.81
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 1.9
10_01_0269 - 2865731-2865752,2866627-2868605 27 2.5
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 27 2.5
07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258 27 3.3
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 27 3.3
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 27 4.3
05_04_0266 - 19558769-19559275,19560852-19560933,19561354-195618... 27 4.3
03_02_0902 + 12278770-12281448 27 4.3
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 26 5.7
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 26 7.6
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281... 26 7.6
>06_02_0214 + 13141213-13143741
Length = 842
Score = 29.1 bits (62), Expect = 0.81
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 153 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 248
A S+ N L N + +D+G SYL R CD
Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 236 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 138
EA+++ G + I++IVAQ +R R T++W
Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 208 SIRILKGSLHSGFTLDEHAQQFTGSLSFTNSA 113
++R L G L SG T+ EH++ GS S NSA
Sbjct: 287 AVRYLVGHLASG-TIQEHSRYSVGSSSSKNSA 317
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 202 RILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKT 101
RI + LH+ +T D AQ+F L + +S R KT
Sbjct: 343 RIHEMVLHNKYTDDRFAQEFGIKLKYHDSGREKT 376
>07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258
Length = 610
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 159 NTPNNSLVHCPSRIAQEAKRAPRNDSFAIMMHNK 58
+ P+NSL H + ++ + RND+ ++ H K
Sbjct: 154 DAPSNSLRHVLDKWIEDGNQLERNDAMLVLFHLK 187
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 184 LHSGFTLDEHAQQFTGSLSFTNSARSKT 101
LH+ +T D AQ+F L + +S R KT
Sbjct: 556 LHNKYTEDRFAQEFGIKLKYHDSGREKT 583
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 153 PNNSLVHCPSRIAQEAKRAP 94
P+ SL CPS IA KRAP
Sbjct: 186 PSKSLDLCPSEIAVPGKRAP 205
>05_04_0266 -
19558769-19559275,19560852-19560933,19561354-19561865,
19563113-19563124
Length = 370
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +3
Query: 150 WACSSNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAGATFPYLTASKSVCKKEKKYI 320
W CS + C DP +I D+ ++ N K T + + K + Y+
Sbjct: 246 WHCSRRPDCSCEDPADIEYDSSRIWVLDKPNIPKPPAGTERLVIMRGDLSKMDTYYV 302
>03_02_0902 + 12278770-12281448
Length = 892
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 162 SNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAG 260
+NVN N + +++D G YL RL C+ +G
Sbjct: 307 NNVNLQYNLTWAMQVDAGYQYLVRLHFCEIQSG 339
>07_03_1546 +
27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 55 EFIVHHNGKTIVSWCPF 105
EF+ H G +SWCP+
Sbjct: 260 EFVGHSKGVIAMSWCPY 276
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -1
Query: 153 PNNSLV-HCPSRIAQEAKRAPRNDSFAI-MMHNKLTRLSENTE 31
P++++V +C S A++ AP ND+ A+ M + L+ E+ E
Sbjct: 164 PSDNIVQNCTSASAEQLDMAPSNDNLAVEKMSSSLSEPEESFE 206
>04_01_0223 +
2813129-2814014,2815928-2816309,2816358-2816459,
2816727-2817249
Length = 630
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 153 ACSSNVNPLCNDPFNIRIDTGNSYLFRLEN 242
A ++ + P PF+ + D N+Y +RLE+
Sbjct: 34 AAATTLPPPPPPPFSFKFDFSNTYTYRLED 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,397,301
Number of Sequences: 37544
Number of extensions: 151121
Number of successful extensions: 371
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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