Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0566
         (321 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 27   3.4  
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.4  
SB_1424| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.4  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_26150| Best HMM Match : DUF910 (HMM E-Value=5.6)                    26   7.9  

>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 132 CPSRIAQEAKRAPRNDSFAIMMHNKLTRLSENTERRLSFARI 7
           C S IA + + +P+NDS     H+KLT  S+    R SFA +
Sbjct: 161 CSSGIAADIETSPKNDS---KSHSKLTNGSKYINNR-SFASL 198


>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 132 CPSRIAQEAKRAPRNDSFAIMMHNKLTRLSENTERRLSFARI 7
           C S IA + + +P+NDS     H+KLT  S+    R SFA +
Sbjct: 642 CSSGIAADIETSPKNDS---KSHSKLTNGSKYINNR-SFASL 679


>SB_1424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 212 REFLFVPPRKLRQECWSYLSLFD-SFEVCMQER 307
           RE   V   K+RQ+CW  L+ F   F+ C+  +
Sbjct: 58  RELESVSQAKIRQQCWQVLAQFALGFKPCLDRQ 90


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 50   LVSLLCIIMAKLSFLGARFASCAIREGQ 133
            LV  LC   A+ SF  A +A+C I E Q
Sbjct: 4373 LVCFLCQQAAEKSFKSALYAACGIAESQ 4400


>SB_26150| Best HMM Match : DUF910 (HMM E-Value=5.6)
          Length = 187

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 278 QIRKGSSSILVAVFEAE-QIRIPGVDTDIKRIVAQRIHVRRTRPTIH 141
           +I  G   I+  +  A+  I  PG+  DIK +VA   H +  +P+ H
Sbjct: 117 RIHHGHQGIVKCLERAKLSICWPGITQDIKSVVAMYDHCQIHKPSQH 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,262,004
Number of Sequences: 59808
Number of extensions: 197568
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)