Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0566
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   2.3  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    27   3.0  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    27   3.0  
U88168-7|AAC24396.2|  132|Caenorhabditis elegans Hypothetical pr...    26   5.3  
U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical p...    26   5.3  
AF440509-1|AAL34097.1|  194|Caenorhabditis elegans SKR-7 protein.      25   9.2  
AC024790-7|AAF60641.1|  194|Caenorhabditis elegans Skp1 related ...    25   9.2  

>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 172 IRCATILLISVSTPGI-LICSASKTATRMLEL 264
           +RC T+L+ S+S PGI L C A    T   +L
Sbjct: 271 LRCFTMLITSLSVPGIHLQCEARPNTTMQEKL 302


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 178 CATILLISVSTPGILICSA 234
           C  ++LIS+STP  L+C+A
Sbjct: 710 CMILVLISISTPIFLVCAA 728


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 305 FLAYRLRS-CQIRKGSSSILVAVFEAEQIRIPGVDTDIKRIVAQRIHV 165
           F A  LRS   IR  S++   ++ +   +++ G   D+ R+V+QR+++
Sbjct: 729 FKAEILRSGTMIRSPSAARFESLLQQRHVQLLGRSVDLNRVVSQRVNM 776


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 305 FLAYRLRS-CQIRKGSSSILVAVFEAEQIRIPGVDTDIKRIVAQRIHV 165
           F A  LRS   IR  S++   ++ +   +++ G   D+ R+V+QR+++
Sbjct: 729 FKAEILRSGTMIRSPSAARFESLLQQRHVQLLGRSVDLNRVVSQRVNM 776


>U88168-7|AAC24396.2|  132|Caenorhabditis elegans Hypothetical
           protein K11H12.6 protein.
          Length = 132

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 132 SEPVNCWACSSNVNPLCNDPF 194
           S P+NC+ C+S   P C D +
Sbjct: 14  SAPLNCYICNSKKQPDCIDNY 34


>U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical
           protein C15H9.9 protein.
          Length = 137

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 132 SEPVNCWACSSNVNPLCN 185
           S  ++C+ C+SN NP C+
Sbjct: 17  SANISCYQCTSNENPTCD 34


>AF440509-1|AAL34097.1|  194|Caenorhabditis elegans SKR-7 protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 186 DPFNIRIDTGNSYLFRLENCDKNAGATFP 272
           DP  I   TGN     +E C+K+ G T P
Sbjct: 62  DPIPITNVTGNIMKMVIEWCEKHKGETLP 90


>AC024790-7|AAF60641.1|  194|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 7 protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 186 DPFNIRIDTGNSYLFRLENCDKNAGATFP 272
           DP  I   TGN     +E C+K+ G T P
Sbjct: 62  DPIPITNVTGNIMKMVIEWCEKHKGETLP 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,555,841
Number of Sequences: 27780
Number of extensions: 142447
Number of successful extensions: 354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)