Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0566
         (321 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly...    27   2.8  
At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa...    26   4.9  
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-...    26   4.9  
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    26   4.9  
At5g19110.1 68418.m02273 extracellular dermal glycoprotein-relat...    26   6.5  
At1g08540.1 68414.m00946 RNA polymerase sigma subunit SigB (sigB...    25   8.6  

>At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly
           identical to SP|P42734, probable mannitol dehydrogenase
          Length = 360

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 211 VSIRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTK 92
           V + ++ GS  S  + D+  + +   +SFT +A    GTK
Sbjct: 94  VGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTK 133


>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
           family protein (ATL6) contains Pfam profile: PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 398

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 236 EAEQIRIPGVDTDIKRIVAQRIH 168
           E +  R+PGV  D+KR+   R H
Sbjct: 217 EVDSRRLPGVPVDLKRVKFSRSH 239


>At2g29080.1 68415.m03535 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 809

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 83  LSFLGARFASCAIREGQ*TSELLGVF 160
           L F+   FAS A R+G   ++L+GVF
Sbjct: 49  LGFIRRHFASLASRKGLVNNDLIGVF 74


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 179 QRIHVRRTRPTIHWFTVLHE*RKKQNGHQETIVLPL*CTINSLGYLKTPRDVY 21
           +R+ ++R R  +H  T   +      G  ET  LP   TI++L YLK  +D++
Sbjct: 48  RRLKMKRAREDVHTDTQKRKPEVSSRG--ETNKLPR--TIDALTYLKAVKDIF 96


>At5g19110.1 68418.m02273 extracellular dermal glycoprotein-related
           / EDGP-related similar to extracellular dermal
           glycoprotein EDGP precursor [Daucus carota] GI:285741
          Length = 405

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 135 EPVNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLENCDK-NAGATFPYLTASKSVCK 302
           EP N +  + NV      P N+ +D G +  +   +C K  + ++   +T   S CK
Sbjct: 34  EPTNLFYTTFNVGSAAKSPVNLLLDLGTNLTWL--DCRKLKSLSSLRLVTCQSSTCK 88


>At1g08540.1 68414.m00946 RNA polymerase sigma subunit SigB (sigB) /
           sigma factor 2 (SIG2) identical to sigma factor SigB
           [Arabidopsis thaliana] GI:5478446, plastid RNA
           polymerase sigma-subunit [Arabidopsis thaliana]
           GI:2879922, sigma factor [Arabidopsis thaliana]
           GI:2597831, sigma factor 2 (SIG2) [Arabidopsis thaliana]
           GI:2353173; contains Pfam profiles PF04545: Sigma-70,
           region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
           region 2
          Length = 572

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -2

Query: 263 SSSILVAVFEAEQIRIPGVDTDIKRIVAQR 174
           S ++L ++ +  ++R+P  DTD   +++ R
Sbjct: 45  SPALLTSMLDVAKLRLPSFDTDSDSLISDR 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,974,051
Number of Sequences: 28952
Number of extensions: 127265
Number of successful extensions: 362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)