Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0565
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   1.4  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    27   1.8  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   7.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   7.2  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   9.5  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 528 ALACTVGSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTILVG 367
           A + +V S  +G S+   SS FG ++   L+S    VSL      W SGT L G
Sbjct: 91  AWSSSVPSKMLGVSLAAISSSFGEISFLHLSSRYHSVSL----PCWSSGTGLAG 140


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 531 NALACTVGSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTI 376
           N L+ +V ++   A VDL+  D+GVV+ S    V ++    L  S  CS T+
Sbjct: 236 NPLSSSVATIIHDAYVDLSIWDYGVVSPSSYNLVMDVHRYQLYESDECSKTL 287


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 418 FTFFSSFCLVFWYNFSWFRNGTLVLFISFFFCLFINYFVVFCAGMF 281
           F+F     +V  + +  +    LV  +S F+C ++ YF+    G+F
Sbjct: 51  FSFLYLLLIVPLFLYPEYWAFKLVELLSLFYCAYVMYFLPLEVGLF 96


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 237 VASVTFSASGFTFLSSVLVSTAEVVFCF 154
           +A   F  +GFTF+  +L+ T     CF
Sbjct: 109 MALYCFRWTGFTFIEGILICTGLTGLCF 136


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 193 ISLSIYCRSCVLFRRLNCCCVFFRFTWSLRDIMSATGTVV 74
           ISL ++  +  L   L+C  + FR++WSL  ++ A+  ++
Sbjct: 225 ISLPMFHIAENLAISLSCLIISFRYSWSLTLVVLASYPII 264


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 498 VGASVDLASSDFGVVASSFLASVEELVSLFLA 403
           +GA+  L++S  G+   S L ++  L SLF+A
Sbjct: 42  IGATSSLSNSSLGLPEYSNLFAINNLKSLFVA 73


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 146 ELLLRFLQVYL-ELEGYHERNGYCSSQLGSRLFS 48
           E  L+ ++ YL E +  +ER  YC+ QLG   FS
Sbjct: 41  EHALKIIEKYLGETDAVYER-AYCAFQLGKEDFS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,176
Number of Sequences: 5004
Number of extensions: 29524
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)