Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0565
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_26464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_22621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_4242| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_18933| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_1863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0) 27 7.5
SB_31194| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 2 DPPGCRNSARGHSIAG 49
DPPGCRNS + S+ G
Sbjct: 17 DPPGCRNSIQARSVDG 32
>SB_26464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 134 RFLQVYLELEGYHERNGYCSSQLGSRLFSRQCYALVPNSCSPGD 3
+FL + E++ + + + ++G+ F C+ NSCSPGD
Sbjct: 4 KFLFICWEIKAKNRESPSKTKRVGTLDFQNDCF-YTSNSCSPGD 46
>SB_22621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 107 EGYHERNGYCSSQLGSRLFSRQCYALVPNSCSPGD 3
+ +H GY +L + R+ V NSCSPGD
Sbjct: 16 QSHHRTEGYIREKLQG--YIREFVLRVSNSCSPGD 48
>SB_4242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 51 QPAMLCPRAEFLQPGGS 1
+P+M CP EFLQPGGS
Sbjct: 7 KPSM-CPPIEFLQPGGS 22
>SB_18933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 44 QCYALVPNSCSPGD 3
QC+++ NSCSPGD
Sbjct: 3 QCWSVTSNSCSPGD 16
>SB_1863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 50 SRQCYALVPNSCSPGD 3
S+QC + NSCSPGD
Sbjct: 5 SKQCLLEISNSCSPGD 20
>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 722
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +2
Query: 23 SARGHSIAG*TVWSPTGNYSTRCAHDIPQAPGKPEENATAVQPTKQNT 166
S RG G V + T Y D P PG+ E N VQ K T
Sbjct: 534 SGRGTCECGQCVCNATSGYVGAFCDDCPTCPGQCEANRDCVQCMKFGT 581
>SB_31194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 48 PAMLCPRAEFLQPGGS 1
PA +C EFLQPGGS
Sbjct: 76 PASVCDCIEFLQPGGS 91
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 2 DPPGCRNSARGHSIA 46
DPPGCRNS G+ ++
Sbjct: 34 DPPGCRNSIDGNGVS 48
>SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 41 CYALVPNSCSPGD 3
C+A V NSCSPGD
Sbjct: 21 CHAHVSNSCSPGD 33
>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 116 LELEGYHERNGYCSSQLGSRLFSRQCYALVPNSCSPGD 3
LE + + +G + L LFS Q + NSCSPGD
Sbjct: 27 LEAKSTNLVSGVNVASLREDLFSLQHVRALSNSCSPGD 64
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 26 ARGHSIAG*TVWSPTGNYSTRCA 94
ARG S+ G +WS G+Y+T A
Sbjct: 715 ARGKSVVGLGLWSSVGSYTTLMA 737
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,530
Number of Sequences: 59808
Number of extensions: 230343
Number of successful extensions: 2239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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