Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0565
(543 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 30 0.94
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 30 0.94
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 29 2.9
AF100660-1|AAC68970.2| 442|Caenorhabditis elegans Hypothetical ... 29 2.9
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 29 2.9
U29382-1|AAG00006.1| 382|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm rece... 28 5.0
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 27 8.7
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 145 NCCCVFFRFTWSLRDIMSA-TGTVVPSWAPDCSAGNAMPSC 26
N C VF+R W + +M+ +GTV C +A+PSC
Sbjct: 1256 NNCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAVPSC 1296
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 424 ACFTFFSSFCLVFWYNFSWFRNGTLVLFISFFFCLFINYFVVFC 293
A F + SSF LV ++ + G +FISFF+C+ V C
Sbjct: 276 AAFFYLSSFILVSASSYLNYVIGYGSVFISFFYCIVATSHSVIC 319
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 409 FSSFCLVFWYN--FSWFRNGTLVLFISFFFCLFINYFVVF 296
FS +FW+ + FRN + F+ FFF LF + F
Sbjct: 193 FSPCSFLFWFRPVYKAFRNDSSFNFMVFFFVLFFHCIFTF 232
>AF100660-1|AAC68970.2| 442|Caenorhabditis elegans Hypothetical
protein H35B03.1 protein.
Length = 442
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 510 GSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVW 391
G++ VG DL ++ FLA+VE+ +SLF+ W
Sbjct: 36 GNIVVGVE-DLRDANLRFAVRYFLANVEKSISLFIVKQEW 74
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 409 FSSFCLVFWYN--FSWFRNGTLVLFISFFFCLFINYFVVF 296
FS +FW+ + FRN + F+ FFF LF + F
Sbjct: 193 FSPCSFLFWFRPVYKAFRNDSSFNFMVFFFVLFFHCIFTF 232
>U29382-1|AAG00006.1| 382|Caenorhabditis elegans Hypothetical
protein R03H10.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 376 FSWFRNGTLVLFISFFFCLFINYFVVFC 293
+ WF G L+ + FF +F+ F+ FC
Sbjct: 113 YKWFLRGYLLSELGVFFFIFLASFLYFC 140
>AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm
receptor protein 66 protein.
Length = 331
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 87 VALMISLKLQVNLKKTQQQFSLRNKTQLLQ*ILRLMI 197
+ + SLK+ N+KK ++FS++N+ Q + L+I
Sbjct: 212 IIIFCSLKMHFNMKKELEKFSVQNQNLQRQYFIALVI 248
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 421 CFTFFSSFCLVFWYNFSWFRNGT---LVLFISFFFCLFINYFVVFCAGMF 281
CF F F +F Y+F F GT ++ + ++F + Y + F A F
Sbjct: 239 CFLTFFQFIFMFIYSFGVFLLGTIREIIGYEQYYFWVVWVYTIPFIAASF 288
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 388 FWYNFSW--FRNGTLVLFISFFFCLFINYFVVFCAG 287
FW+ F GT V+ +FF INY ++F G
Sbjct: 320 FWHLFKTKEIMTGTFVIAFTFFATTLINYSIMFNLG 355
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 388 FWYNFSW--FRNGTLVLFISFFFCLFINYFVVFCAG 287
FW+ F GT V+ +FF INY ++F G
Sbjct: 320 FWHLFKTKEIMTGTFVIAFTFFATTLINYSIMFNLG 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,558,758
Number of Sequences: 27780
Number of extensions: 185503
Number of successful extensions: 685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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