Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0565
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.1  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 358 GTLVLFISFFFCLFINYFVVFCAGMFI 278
           GTL + +  F   ++ +F+++ A  F+
Sbjct: 306 GTLAVVVGGFVACWLPFFILYLATPFV 332


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 391 VFWYNFSWFRNGTLVLFISFFFCLFINY 308
           VF    S+  +G  +LF+ FF C+ I++
Sbjct: 441 VFQLLDSYAVSGFCLLFLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 391 VFWYNFSWFRNGTLVLFISFFFCLFINY 308
           VF    S+  +G  +LF+ FF C+ I++
Sbjct: 494 VFQLLDSYAVSGFCLLFLMFFECIAISW 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,940
Number of Sequences: 438
Number of extensions: 1850
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)