Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0565
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48185.1 68416.m05256 expressed protein                             25   1.4  
At5g27430.1 68418.m03274 signal peptidase subunit family protein...    28   3.5  
At3g16030.1 68416.m02027 lectin protein kinase family protein co...    28   4.6  
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing...    27   6.1  

>At3g48185.1 68416.m05256 expressed protein
          Length = 85

 Score = 24.6 bits (51), Expect(2) = 1.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 541 WSIKCSCLYSWFYVC 497
           + IKC C YS+F  C
Sbjct: 35  YQIKCVCFYSFFSFC 49



 Score = 23.8 bits (49), Expect(2) = 1.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 421 CFTFFSSFCLVFWYNFSWFRNGTLVLFISFFFCLFINYFVVFCAGM 284
           CF  F SFC+ F +++       L  ++  FF   I+ F   C G+
Sbjct: 41  CFYSFFSFCVSFSFDY------PLYFYLLLFFFFRISPFSDRCFGL 80


>At5g27430.1 68418.m03274 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 482 IWQVLISEWSHPLFWLQLKSLFHFF*Q 402
           +W  +I E  H  FW+Q+ + + F  Q
Sbjct: 100 LWDAIIPEKEHAKFWIQISNKYRFIDQ 126


>At3g16030.1 68416.m02027 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 850

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 134 RFLQVYLELEGYHERNGYCSSQLGSRLFSRQCYALVPNSCS 12
           RF   + E       NG+  +++G RL S  CY     +CS
Sbjct: 336 RFGYTFRETVSPSAENGFVFNEIGRRLSSYDCYVKCLQNCS 376


>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein similar to
           Ran binding protein [Homo sapiens] GI:624232; contains
           Pfam profile PF00638: RanBP1 domain
          Length = 465

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 288 ACSSGFTEAGTDDADTGVASVTFSASGFTF 199
           A SS    + + +A TG+AS  FSAS F+F
Sbjct: 237 ALSSFHQHSSSKNAFTGLASTGFSASSFSF 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,792,306
Number of Sequences: 28952
Number of extensions: 159099
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)