Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0564
         (523 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX...    36   0.56 
UniRef50_Q8ID66 Cluster: Putative uncharacterized protein PF13_0...    34   2.3  
UniRef50_A2P5X2 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX47;
           n=32; Eukaryota|Rep: Probable ATP-dependent RNA helicase
           DDX47 - Homo sapiens (Human)
          Length = 455

 Score = 35.9 bits (79), Expect = 0.56
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +1

Query: 70  TEIFSVDFLKNPEKLRLAALFHFPTFVHFHRY*TINKLKHYYIFIPEE 213
           T +FS    K  +KL+ AAL +        +Y T+ KL+ YYIFIP +
Sbjct: 201 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSK 248


>UniRef50_Q8ID66 Cluster: Putative uncharacterized protein
           PF13_0338; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF13_0338 - Plasmodium
           falciparum (isolate 3D7)
          Length = 796

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
 Frame = +1

Query: 46  ISVKWWSFTEIFSVDFLKNPEKLRLAALFH-FPTFVHFHRY*TINKLKHYYIFIPEETL- 219
           ISV+  ++   + +  +KN +KL+LA  +  F TF   +     N + HY++  P+E + 
Sbjct: 271 ISVENLTYLNTYHLAIVKNEDKLQLAFTYDLFETFDPQYLNTEFNGVSHYFVLAPDEMVY 330

Query: 220 ---NRQNKRNHTTSFLAFPPKSPLSSIITLNSQILVIYVH 330
              +   K+N+       P K  +   +  N  +  IY +
Sbjct: 331 LFYHGNEKKNYVIKIKTVPRK--IGCELNTNDTVNKIYTY 368


>UniRef50_A2P5X2 Cluster: Putative uncharacterized protein; n=1;
           Vibrio cholerae 1587|Rep: Putative uncharacterized
           protein - Vibrio cholerae 1587
          Length = 165

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 314 WSFMFTTCVRKTNLTILTEG*NNTKRPNLFSIGCIVCTKKKD 439
           W+F    C R+       E   N K+ NL+S GCIV  K+ D
Sbjct: 62  WNFKVGYCFREALDLFFMERKRNNKKVNLWSQGCIVSFKEGD 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,692,148
Number of Sequences: 1657284
Number of extensions: 8022146
Number of successful extensions: 16612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16609
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)