Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0564
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.9  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   5.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.8  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    25   9.0  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 64   SFTEIFSVDFLKNPEKLRLAALFHFPTFVHFHRY*TINKLKHYYIFI 204
            SF  IFS  F + PE  +    F  P  V   +   I++L + Y FI
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELPLQVISSQSQNISQLLNVYDFI 1882


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 369 SVKMVRLVLRTHVVN--INDQNLRIQSYNT 286
           S++  RL  R H  N  INDQ +R+ SY T
Sbjct: 211 SIETFRLTDRLHESNRHINDQLIRLLSYET 240


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 202 IPEETLNRQNKRNHTTSFLAFPPKSPLSSIITLN 303
           IPE    ++  R+HTTS      +   SSI T N
Sbjct: 152 IPERLSTKKGNRSHTTSNAKRRSQKAASSISTTN 185


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 140 PHLCTFTDIKQLIN*NIITYLYL-KKH*IDKIKEITQLHSSRSRQKVH 280
           P  CT  DIK+        Y+ L KKH  DK+K  +QL  + S  +++
Sbjct: 40  PRTCTANDIKR-------KYIELVKKHHPDKMKNASQLAPTESPPEIN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,224
Number of Sequences: 5004
Number of extensions: 39017
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)