Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0564
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14639| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             28   5.4  

>SB_14639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 169 TINKLKHYYIFIPEETLNRQNKRNHTTSFLAFPPKSPL-SSIITLNSQILVIYVHN 333
           T+  LKH+YI  P  T       N   S    PP + L SS+  + S +     HN
Sbjct: 155 TVETLKHHYIEKPSSTTKDDRHDNRQLSVTEAPPTTHLHSSLRDVASGVYSYQSHN 210


>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 YLYLKKH*IDKIKEITQLHSSRSRQKVHYQV 289
           YL  +K  +DK++   QLHS R+    HY +
Sbjct: 161 YLGSQKKTVDKLEYTLQLHSRRNFHLTHYNI 191


>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 401 FSIGCIVCTKKKDSKNIRFCCKS 469
           + I C VCT +KD+K +  C KS
Sbjct: 350 YEIDCFVCTDEKDTKCVVQCGKS 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,154,999
Number of Sequences: 59808
Number of extensions: 258699
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)