Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0563
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.28 
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)             29   2.0  
SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)                   28   4.5  

>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 266  NKLVGGDCGGNNALVQFSNIVRRDTGSLQHRSESDRYV-QEFLSQN 400
            NKL   +C G   L++      +D   LQ R++ DRYV Q+  S N
Sbjct: 1116 NKLAIAECDGIETLLRLLQRTPKDESELQARAKQDRYVLQDTASDN 1161


>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
          Length = 504

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 419 KTEVYFDFAIKTLEHIYRTPIGAANCLYLDALCWK 315
           K EVY D  + T ++I      + NCL +  LC K
Sbjct: 330 KNEVYGDPCVGTYKYIESNDFASVNCLNVQCLCVK 364


>SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 396 CDKNS*TYLSDSDRCCKLPVSRRTMLENCTSALFPPQSPPTSLFK 262
           C  NS      S  C  +    R   E+ +SA   P SPPTSL+K
Sbjct: 55  CPDNSVAMEIGSTSCTCVRGFYRKANESISSACTGPPSPPTSLYK 99


>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
          Length = 984

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 396 CDKNS*TYLSDSDRCCKLPVSRRTMLENCTSALFPPQSPPTSLFK 262
           C  NS      S  C  +    R   E+ +SA   P SPPTSL+K
Sbjct: 197 CPDNSVAMEIGSTSCTCVRGFYRKANESISSACTGPPSPPTSLYK 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,338
Number of Sequences: 59808
Number of extensions: 261827
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)