Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0563
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical p...    33   0.080
Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical pr...    30   0.99 
L16621-13|ABD63202.1|  141|Caenorhabditis elegans Hypothetical p...    29   1.7  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    28   3.0  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    28   3.0  
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    27   9.2  

>Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical
           protein C34C6.6b protein.
          Length = 500

 Score = 33.5 bits (73), Expect = 0.080
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
 Frame = +2

Query: 272 LVGGDCGGNNALVQFSN--------IVRRDTGSLQHRSESDRYVQEFLSQNQN--IPQSF 421
           +V G CG  NALV  +N        +   +   L   S  ++   EFL Q      P SF
Sbjct: 4   VVEGQCGQQNALVGLANTFGTSNQRVAPSNASLLPSSSMGEQMANEFLRQQARTMAPTSF 63

Query: 422 NMNALLGNLPQ 454
           +M ++  NLPQ
Sbjct: 64  SMKSMQNNLPQ 74


>Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical
           protein C34C6.6a protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
 Frame = +2

Query: 272 LVGGDCGGNNALVQFSNIV----RRDTGS------LQHRSESDRYVQEFLSQNQN--IPQ 415
           +V G CG  NALV  +N      +R   S      L   S  ++   EFL Q      P 
Sbjct: 4   VVEGQCGQQNALVGLANTFGTSNQRVAPSNAAASLLPSSSMGEQMANEFLRQQARTMAPT 63

Query: 416 SFNMNALLGNLPQ 454
           SF+M ++  NLPQ
Sbjct: 64  SFSMKSMQNNLPQ 76


>L16621-13|ABD63202.1|  141|Caenorhabditis elegans Hypothetical
           protein ZK688.12 protein.
          Length = 141

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 282 PPTSLFKDIFYIPDYLFTMNDLSHVRSIRTKVNARSMLTISKYQHRFLLSL 130
           P TS+  ++ ++P  L   ND+ H      K +  + ++  K  +R ++ L
Sbjct: 73  PETSIEIELLHVPGILLPRNDVHHFSVYYIKCDTEAQVSFIKINYRVIIHL 123


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 360 DRCCKLPVSRRTMLENCTSALFPPQSPP 277
           DR C  P  +R + + C SA  P  SPP
Sbjct: 507 DRICVCPEGQRAVDQTCVSASEPVTSPP 534


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 360 DRCCKLPVSRRTMLENCTSALFPPQSPP 277
           DR C  P  +R + + C SA  P  SPP
Sbjct: 604 DRICVCPEGQRAVDQTCVSASEPVTSPP 631


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 256 FLYT*LFIYNE*LVTRT*YSYKGQCSINA 170
           FL    F+++E +  R+ YSY GQ  +NA
Sbjct: 6   FLLNFAFLFSEAIRCRSCYSYNGQACVNA 34


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 291 PQSPPTSLFKDIFYIPDYLFTMNDLSHVRSIRTKVN 184
           P +  TS+ ++ F +P Y+ T ++ S  R + +KVN
Sbjct: 746 PVADATSILQERFPMPRYIVTEHEGSQARFLLSKVN 781


>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 161 VNINIGFCYLY*AQLFTYNYT*L*HQQYVFHYF 63
           +N+      L+ AQ F +N+T +   QYV H+F
Sbjct: 38  INMMFYIWVLFSAQQFHFNFTLVSGTQYVIHFF 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,062,054
Number of Sequences: 27780
Number of extensions: 211965
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)