Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0563
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32130.1 68416.m04091 hypothetical protein                          27   5.0  
At1g05820.1 68414.m00609 protease-associated (PA) domain-contain...    27   8.7  

>At3g32130.1 68416.m04091 hypothetical protein 
          Length = 214

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 250 IKNVFKQTCWW*LW--WKQCTCTIFQHSASRYRQ 345
           I ++ +Q   W LW  WK    +++QH +S +R+
Sbjct: 34  IPDIDRQLPIWMLWRIWKSRNLSVYQHKSSTWRE 67


>At1g05820.1 68414.m00609 protease-associated (PA) domain-containing
           protein contains weak similarity to protease associated
           (PA) domain proteins, Pfam:PF02225
          Length = 441

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 369 SDSDRCCKLPVSRRTMLENCTS 304
           SD D+  KLPV+  T L++C++
Sbjct: 74  SDKDKAVKLPVALTTPLDSCSN 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,062,864
Number of Sequences: 28952
Number of extensions: 179762
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)