Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0561
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 246 LLRILIPKKLSKYLELLLFTQPKTYQALTPLYQYLFHLL*KTKNYYAKKQLNI 404
           +LR+ I  KLS+ +++ L  Q  T         Y + L  + K Y   K L++
Sbjct: 53  VLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKMLHV 105


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 246 LLRILIPKKLSKYLELLLFTQPKTYQALTPLYQYLFHLL*KTKNYYAKKQLNI 404
           +LR+ I  KLS+ +++ L  Q  T         Y + L  + K Y   K L++
Sbjct: 53  VLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKMLHV 105


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 16/89 (17%), Positives = 40/89 (44%)
 Frame = +2

Query: 362 IENEELLCEKTVKYYGQPAAIIVADREKTANKAAGLVKIKYDFVNKEKPLLTIDEVLNSP 541
           +EN+++L E       Q A I+  + +  A++      I+Y  + K K L   D  +   
Sbjct: 399 VENDKILQEVIKFRQKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKRLFGKDRKIMDM 458

Query: 542 KRKTLVRQDMTVQPTDSGSDISTVIEGSM 628
            R+ ++ +    +  +    ++ +++G +
Sbjct: 459 VREKIIEEKRKNKNKNLTPAVNIIVKGDV 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,108
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)