Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0560
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.093
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    28   0.66 
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    28   0.87 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   2.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   2.7  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   3.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   3.5  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   3.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   4.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   4.6  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   4.6  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   4.6  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   6.1  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   6.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.093
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 149 PPPYLDEQSRVDEPL----TFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQPP 307
           PPP    ++R   P+    +   L P PPP   NA GS+P   P G+  P  P  PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP-PQGRSAP--PPPPP 366



 Score = 26.2 bits (55), Expect = 2.7
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 104 SRNLVHTLDEPTGLQP--PPYLDEQSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQ 277
           SR     +  P  L P  PP L   +    P+      PLPP        S P   PL  
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP--------SAPIAPPLPA 461

Query: 278 EMPSHPTQPP 307
            MP+ P  PP
Sbjct: 462 GMPAAPPLPP 471


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 211 SVTTPHRLQRPRFRPFRKPSWTRNA*PPYSTSYKSPFSITALATVTVN 354
           S+TTP+R   P FRP R+   +R   P  S +  +   + A  T  +N
Sbjct: 19  SLTTPNRHADPSFRPSRREKQSRLPTPLQSVAASAYSGVNASQTGLLN 66


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 176 RVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQP 304
           R++EP T     P+ PP D    GS   +    Q   + P QP
Sbjct: 75  RIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQAQTAQPPQP 117


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +2

Query: 143 LQPPPYLDE--QSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQPPTK 313
           + PPP   E  +     P+  +    +PPP   + PG      P+  E   H   PP K
Sbjct: 285 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
 Frame = +2

Query: 131 EPTGLQPPPYLDE---QSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQ 301
           EP    PPP +     +     P+  +    +PPP   + PG      P+  E   H   
Sbjct: 202 EPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261

Query: 302 PP 307
           PP
Sbjct: 262 PP 263



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +2

Query: 143 LQPPPYLDE--QSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQPP 307
           + PPP   E  +     P+  +    +PPP   + PG      P+  E   H   PP
Sbjct: 220 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +2

Query: 143 LQPPPYLDE--QSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQPP 307
           + PPP   E  +     P+  +    +PPP   + PG      P+  E   H   PP
Sbjct: 233 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +2

Query: 143 LQPPPYLDE--QSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQPP 307
           + PPP   E  +     P+  +    +PPP   + PG      P+  E   H   PP
Sbjct: 246 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +2

Query: 143 LQPPPYLDE--QSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQPP 307
           + PPP   E  +     P+  +    +PPP   + PG      P+  E   H   PP
Sbjct: 259 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -3

Query: 255 GTEP--GALKSMGGGN--GDKSSNVRGSSTRDCSSRYGGGCKPVGSS 127
           G +P  G L S G  N  GDKS N   S+T   ++   G     GSS
Sbjct: 100 GAKPLFGGLGSTGSANSTGDKSKNTASSATGAATTNPSGSTFNFGSS 146


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 365 YEQYLKVSRQSKDPFNTNIQEFNDSLLKAKCKLIAYPTSID 487
           +  Y++   Q K    + + E +DSLL A  KL   PT  D
Sbjct: 137 WNNYVRFFIQPKLNNTSKLDEISDSLLNAFSKLKEEPTEFD 177


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 21/87 (24%), Positives = 30/87 (34%)
 Frame = +2

Query: 47  GDYEIEYKKGKLNCNADSLSRNLVHTLDEPTGLQPPPYLDEQSRVDEPLTFDDLSPLPPP 226
           GD + ++     N N     RN V  +D  +   P       S V+ P      S + PP
Sbjct: 111 GDTDSDWILVGFNNNFGLAPRNYVEGMDASSA--PASQEPSASGVNAPTVSAPNSMVSPP 168

Query: 227 IDFNAPGSVPSENPLGQEMPSHPTQPP 307
             F  P +      L  +    P  PP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPP 195


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 207 KSSNVRGSSTRDCSSRYGGGCKPVGSSRV*TRLRDKESALQFNFPFLYSI 58
           + SNV+       + + G    P+ S +  T++ +K+  LQ+N P L  I
Sbjct: 505 RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQYNIPGLLII 554


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 149 PPPYLDEQSRVDEPLTFD 202
           PPPY+  QS  D P T D
Sbjct: 691 PPPYMGRQSLNDSPQTSD 708


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/61 (27%), Positives = 23/61 (37%)
 Frame = +2

Query: 134 PTGLQPPPYLDEQSRVDEPLTFDDLSPLPPPIDFNAPGSVPSENPLGQEMPSHPTQPPTK 313
           P     PP    QS +  P +      +PPP   +AP       P+   +P  P QP   
Sbjct: 124 PPSAPAPP--TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP-PAQPAAP 180

Query: 314 V 316
           V
Sbjct: 181 V 181


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -1

Query: 143 NRLVHREYERGCEIRNLRYNLTSPF 69
           ++L++   ++G E+ +LRY+LT PF
Sbjct: 118 SKLIYDLKDQGGELCSLRYDLTVPF 142


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 256 RDGTWGVEVYGGW*RRQVIERKGLIYSRL 170
           RDGT  V+VYG W    +  R  +  S L
Sbjct: 66  RDGTIKVKVYGDWLPSSIFGRLSIFCSSL 94


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +2

Query: 137 TGLQPPPYLDEQSRVDEPLTFDD---LSPL---PPPIDFNAPGSVPSENPLGQEMPSHPT 298
           T  Q P +L E+   DE    DD   + P+   P P  F   GS+ S +     MP+ P+
Sbjct: 28  TSFQTPTFLIEED--DEDTEDDDGPQVLPVHRAPSPAAFRKRGSITSMDQYLVNMPAVPS 85

Query: 299 QPPTKV 316
              +KV
Sbjct: 86  PTASKV 91


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 365 YEQYLKVSRQSKDPFNTNIQEF-NDSLLKAK 454
           +E +LK +  S DP+ +++  F ND+L   K
Sbjct: 221 WEDFLKSNNISDDPYTSSVNSFANDNLAHNK 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,052
Number of Sequences: 5004
Number of extensions: 41004
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)