Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0558
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   1.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.9  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    26   2.5  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   2.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.8  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   7.6  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   7.6  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 180  NKNDINTMSYLCTKSKVFNEVREFRGVL 97
            NK D ++M  LC  +KV   VR+  GVL
Sbjct: 1026 NKEDASSMKGLCCFAKVERIVRQTNGVL 1053


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +2

Query: 179 LQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLFINSVMSNRLKNVIYI 358
           L ++Y+F P   T    + +   S   ++   P++N N       +NS+M N + +V   
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLINASFATLVSLYPEENEN-------LNSIMLNGINSVFQF 329

Query: 359 AQSLAVVVRDIFVYLFV 409
           A    ++++  F  + V
Sbjct: 330 AFDYPLILQAAFSQIMV 346


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 194 SFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLFI 316
           +F P+++  N+F P F     + IW   ++  N  NA+ F+
Sbjct: 20  TFLPVSSAGNVFTPRFQLQAIRSIWIRSEETPN-ENALKFL 59


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 245 YSVTKIIWFPPKDNSNTTNAML 310
           Y VTK++W P    SNT + +L
Sbjct: 108 YPVTKLLWNPSSVGSNTDSQLL 129


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 400 INKNVPYNYS*ALGNVNNIFKSVGHHTIYE 311
           IN  +P++ S A GN+  +F++V   T+ E
Sbjct: 664 INSVIPHSDSLAAGNLRLMFRNVKRQTMQE 693


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 410 SQIDKQKCPLQLQLGFGQC 354
           SQ DK++  +   LGFG+C
Sbjct: 684 SQEDKERASILQNLGFGEC 702


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 296 TNAMLFINSVMSNRLKNVIYIAQSLAVVV 382
           TN+++FI S  +NRL  ++    ++A++V
Sbjct: 482 TNSLMFIRSGGNNRLAGIMLALATVALLV 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,838
Number of Sequences: 5004
Number of extensions: 40997
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)