Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0558
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 31 0.61
06_01_0582 + 4172154-4173614 31 0.61
07_03_0393 - 17630097-17630367,17630483-17630709 29 1.9
04_04_0651 - 26952360-26952437,26952923-26952999,26954072-269543... 29 2.5
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 28 3.3
07_03_0804 - 21639016-21639231,21639379-21639555,21640120-216405... 28 4.3
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 27 7.5
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668... 27 7.5
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 27 10.0
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292... 27 10.0
01_07_0252 - 42296138-42296281,42296527-42296613,42297043-422971... 27 10.0
01_06_0268 - 28026512-28026682,28026782-28026919,28027151-280273... 27 10.0
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344... 27 10.0
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 30.7 bits (66), Expect = 0.61
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 41 AAGDGEPVDDPSPFPSRAQRT-PRNSRTSLKTLLLVHKYDMVLMSFLLQIYYSFNPLTNT 217
AAGDG + PSP P A+ PR ++ +T+ HK ++++ L I ++
Sbjct: 365 AAGDGLVLAPPSPAPRIAKWVPPREAKRQGETIAKGHKNYELMLNLQLGIRHAVGKQGPV 424
Query: 218 TNLFLPIFIYSVTKIIW--FPPKDNSNT 295
T L L + + +W FPP+ + T
Sbjct: 425 T-LDLKSSAFDPKEKVWTKFPPEGSKYT 451
>06_01_0582 + 4172154-4173614
Length = 486
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -1
Query: 78 GEGSSTGSPSPAAVSGPN 25
G+GSS+G SPA+VSGP+
Sbjct: 16 GDGSSSGGSSPASVSGPS 33
>07_03_0393 - 17630097-17630367,17630483-17630709
Length = 165
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 93 ARDGKGEGSSTGSPSPAAVSGPNI 22
A +G+GEGSS GS AA +G +I
Sbjct: 30 AEEGEGEGSSGGSGKAAAAAGSSI 53
>04_04_0651 -
26952360-26952437,26952923-26952999,26954072-26954300,
26954926-26955537
Length = 331
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 35 ETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLK 130
+T + DGE V DPSP + R P +S++
Sbjct: 55 DTGSTDGECVSDPSPGRASTNRPPEEKESSVE 86
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 156 SYLCTKSKVFNEVREFRGVLCARDGKGEGSSTGSPSPAAVS 34
++L + +K N+ RE R +R G GEG++T + + AAV+
Sbjct: 335 TFLTSPAKATNQEREARA--SSRMGGGEGATTAAAAAAAVA 373
>07_03_0804 -
21639016-21639231,21639379-21639555,21640120-21640588,
21640608-21641218
Length = 490
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 3 QEFGTRQYSVLRQQQAMENLSMTLHLFHP 89
+ +G+ L++ ++ NL++TLH +HP
Sbjct: 390 KSYGSSVVHFLKRNSSIRNLTLTLHPYHP 418
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 343 KCYLHCPKPSCSCKGHFCLSICDCLH 420
+C+ CP C KG C S+ +H
Sbjct: 177 RCHGECPHGDCKNKGELCPSLKSLIH 202
>09_03_0167 +
12965030-12965356,12966100-12966387,12966704-12966826,
12967229-12967611,12967863-12968190,12968324-12968353,
12968837-12968989,12969510-12969815
Length = 645
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 99 LCARDGKGEGSSTGSPSPAAVSGPNIASC 13
+ A DG + ++GSP+ A V PN+ C
Sbjct: 149 ISAEDGNSQDVTSGSPNIALVLCPNVMLC 177
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 165 NTMSYLCTKSKVFNEVREFRGVLCARDGKGEGSS--TGSPSPAAVSGPNIAS 16
+T+S LC K+ V + ++C + K SS S S ++VSG ++++
Sbjct: 751 STLSGLCNKNPVHQVANKILSMICRKMNKPVVSSGNLSSTSSSSVSGSSVST 802
>02_04_0290 -
21627733-21628353,21628424-21628663,21628874-21629214,
21630934-21631612,21631893-21631962,21632063-21632190
Length = 692
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 147 CTKSKVFNEVREFRGVLCARDGKGEGSSTGSPSPAAVSG 31
C++S + RGV A G G GS PAA+ G
Sbjct: 194 CSESIAWKACANPRGVRWAYTGAGAGSGGARGGPAAIRG 232
>01_07_0252 -
42296138-42296281,42296527-42296613,42297043-42297135,
42297267-42297341,42297480-42297575,42297987-42298133,
42298225-42298296,42298912-42298959,42299507-42299607,
42300226-42300337,42300506-42300590,42300693-42300848,
42300956-42301047,42301155-42301238,42301676-42301726,
42302227-42302295,42302417-42302476,42303305-42303535
Length = 600
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 11 RHEAIFGPETAAGDGEPVDDPSPFPSRAQRTPRNSR 118
RH A G GDGE PSP PSR +R R R
Sbjct: 7 RHNACGG---GGGDGE--SPPSPLPSRFERFRRRLR 37
>01_06_0268 -
28026512-28026682,28026782-28026919,28027151-28027366,
28027488-28027564,28027845-28028448
Length = 401
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 65 DDPSPFPSRAQRTPRNSRTSLKTLLLVHKYDMVLMSFLLQIYYS--FNPLTNTTNLF 229
DDP + +A + R ++S++ + DMV+ F ++ S + +NTT F
Sbjct: 260 DDPLEYVRKATKVTRRKKSSMEAIFTYWSADMVVKLFGIKAAASLCYGMFSNTTLSF 316
>01_01_0467 -
3446243-3446254,3446331-3446420,3446544-3446816,
3446898-3447066,3447579-3447646,3447890-3448074,
3448683-3448806
Length = 306
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 233 VKINLLYLSKG*NYSIF--ATKMTLIPCRICVLRVRFSMKF 117
+ I LL LS G N F TK+ +IPC + + + F KF
Sbjct: 85 ISIGLLNLSLGFNSVGFYQMTKLAIIPCTVILETLFFRKKF 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,342,340
Number of Sequences: 37544
Number of extensions: 242783
Number of successful extensions: 840
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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