Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0558
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)                  31   0.48 
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          29   1.9  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   2.5  
SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)           29   2.5  
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)             28   3.4  
SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_59072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)                    27   5.9  
SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_55799| Best HMM Match : Na_trans_assoc (HMM E-Value=1.5)            27   7.7  
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)            27   7.7  

>SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)
          Length = 460

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = -1

Query: 387 SLTTTARLWAM*ITFLSLLDITLFMNNIAFVVFELSLGGNHMIFVTEYINIGKNKFVVFV 208
           S+ T A +W   + F SLL     MN   F + +L+L  ++ +     I+I    F+VF 
Sbjct: 144 SVATVAAIWIYVVVF-SLLPEIFTMNIGLFFLVDLAL--HNTLLTVALISIYIGTFIVFH 200

Query: 207 KGLKL*YICNKNDIN 163
           K ++   I N+N  N
Sbjct: 201 KAVQRSEIANENQNN 215


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 314 INSVMSNRLKNVIYIAQSLAVVVRDIFVYLFVTVCI 421
           +  +MS++ + + Y AQ+L   + D+F Y+   VC+
Sbjct: 133 LGELMSSKSRKICYDAQALIKCLLDVFAYVSDEVCL 168


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 137 LLVHKYDMVLMSFLLQIYYS-FNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLF 313
           L+V  +  ++M FL+ +++S  N       +   +     T + WF    NS+   A +F
Sbjct: 50  LVVFMFATIMMCFLISVFFSRANVSAACGGIIFFVTYLPYTMVRWFEAFMNSSQIAAAVF 109

Query: 314 INS 322
           +NS
Sbjct: 110 MNS 112


>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
          Length = 237

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 283 QFKHYKCNVIHK*CDVQQT*KCYLHC--PKPSCSCKGHFCLSICDCLHTIC 429
           Q ++  C V +  C V+       +C      C C+  +C+S+C  L T+C
Sbjct: 143 QVEYCMCQVEYCMCQVEYCMYQVEYCIYQVEYCMCQVEYCMSVCAKLSTVC 193


>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
          Length = 811

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 186 ICNKNDINTMSYLCTKSKVFNEVREFRGVLCARDGKGEGSSTGSPSP 46
           IC + + + + +L   ++  N+ RE  GV C    + E +S  SP P
Sbjct: 471 ICEQEECSCLDHLSANAEYSNK-REMEGVTCVESTRLELTSCVSPPP 516


>SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 218 TNLFLPIFIYSVTKIIWFPPKDNSN-TTNAML--FINSVMS 331
           T+ F+ + + +V   +WFPP + +  TT AM+  +I S  S
Sbjct: 153 TSSFMTVCVPAVLSAVWFPPHERATATTLAMVAGYIGSAAS 193


>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 71  PSPFPSRAQRTPRNSRTSLKTLLLVHK 151
           P+P P+   +TP + +  +KT  +VHK
Sbjct: 288 PTPLPNSDDKTPDDKKLKVKTPSVVHK 314


>SB_59072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 32  PETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHKYDMVLMSFLLQ 184
           PET     + + D   F + A+  P NSR +   L L+  YD   +  +++
Sbjct: 32  PETLLCTNDVLSDKKDFSTFARTIPANSRLAPPLLKLLQLYDWAWIGLVVE 82


>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
          Length = 334

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 35  ETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTL 136
           E    + +P D+P P P R  R  R +R    TL
Sbjct: 135 EVREAETKPSDEPPPLPERTDRLERIAREKTLTL 168


>SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 71  PSPFPSRAQRTPRNSRTSLKTLLLVHK 151
           P+P P+   +TP + +  +KT  +VHK
Sbjct: 77  PTPLPNSDDKTPDDKKLKVKTPSVVHK 103


>SB_55799| Best HMM Match : Na_trans_assoc (HMM E-Value=1.5)
          Length = 577

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 243 INIGKNKFVVFVKGLKL*YIC-NKNDINTMSYLC 145
           + +G+   +V  KGLK+  IC  K+DI  ++ +C
Sbjct: 97  LQLGQYSIIVGTKGLKIVQICYMKSDIANLNQIC 130


>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
          Length = 854

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 466 KNSALEDCDILINRLYANSHK*INKNVPYNYS*ALGNVNNIFKSV 332
           K  A ED DI    +Y +  + +N NV   Y    GNV+ ++K +
Sbjct: 265 KLKAREDLDISEPAIYLDIWRSMNSNVGAVYKGLAGNVDAVYKGL 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,258
Number of Sequences: 59808
Number of extensions: 301678
Number of successful extensions: 990
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)