Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0558
(468 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 30 0.72
U80029-13|AAB37592.2| 429|Caenorhabditis elegans Hypothetical p... 30 0.95
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF068709-10|AAC19252.2| 345|Caenorhabditis elegans Seven tm rec... 29 2.2
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 29 2.2
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 28 2.9
U53341-7|AAC69111.3| 744|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical ... 27 6.7
Z98853-1|CAB57901.1| 262|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 8.9
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 8.9
U58758-14|AAB93433.2| 842|Caenorhabditis elegans High incidence... 27 8.9
U58754-8|AAK72082.1| 325|Caenorhabditis elegans Serpentine rece... 27 8.9
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 8.9
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 27 8.9
AF178755-1|AAD52669.1| 842|Caenorhabditis elegans HIM-14 protei... 27 8.9
AF040656-2|ABC71795.1| 206|Caenorhabditis elegans Hypothetical ... 27 8.9
AF040656-1|AAB95048.2| 234|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 30.3 bits (65), Expect = 0.72
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 186 ICNKNDINTMSYLCTKSKVFNEVRE--FRGVLCARDGKGEGSSTGSPS 49
+C K IN + C V NE+ R C+R G G GSST PS
Sbjct: 61 MCTKQCINNVCQ-CRSGYVRNEITRQCVRQAQCSRPGTGFGSSTPFPS 107
>U80029-13|AAB37592.2| 429|Caenorhabditis elegans Hypothetical
protein T20D4.5 protein.
Length = 429
Score = 29.9 bits (64), Expect = 0.95
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +2
Query: 128 KTLLLVHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAM 307
KTL L H D V M+ ++ F + + I K + FP +SNTT +
Sbjct: 194 KTLALDHNIDYVTMNIIIHKPIKFLKTNAKESSGVTFSIEVYWKTVNFPTPVSSNTTTSE 253
Query: 308 LFINSVMSN 334
F S SN
Sbjct: 254 KFSTSSRSN 262
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 120 VREFRGVLCARDGKGEGSSTGSPSPAAVSGPNIASCRIP 4
VREF L D G G+ SP +S +++ R+P
Sbjct: 428 VREFNAFLLQLDESGRGNCLRDASPGLISTNHLSDLRLP 466
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 120 VREFRGVLCARDGKGEGSSTGSPSPAAVSGPNIASCRIP 4
VREF L D G G+ SP +S +++ R+P
Sbjct: 428 VREFNAFLLQLDESGRGNCLRDASPGLISTNHLSDLRLP 466
>AF068709-10|AAC19252.2| 345|Caenorhabditis elegans Seven tm
receptor protein 33 protein.
Length = 345
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +2
Query: 242 IYSVTKIIWFPPKDNSNTTNAMLFINSVMSNRLKNVIYIAQSLAVVVRDIFVYLFVTVCI 421
I+S T+++ P N N + F+ +SN L + Q L V+ ++ L V +
Sbjct: 55 IFSCTEMLARPFVHNFNAS----FVYFSLSNDLSEFKSLVQMLLVLYSGLYSSLISFVAV 110
Query: 422 QSVYEYITVL*GTVL 466
Q +Y Y+ ++ +L
Sbjct: 111 QFIYRYMVLVNANLL 125
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 120 VREFRGVLCARDGKGEGSSTGSPSPAAVSGPNIASCRIP 4
VREF L D G G+ SP +S +++ R+P
Sbjct: 428 VREFNAFLLQLDESGRGNCLRDASPGLISTNHLSDLRLP 466
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
protein K07G5.3 protein.
Length = 1202
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 41 AAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHK 151
A GDGE P PF + +N R S+K L+ K
Sbjct: 41 APGDGEQSPSPGPFTKDEKDKKQNRRESIKEHLMKFK 77
>U53341-7|AAC69111.3| 744|Caenorhabditis elegans Hypothetical
protein F49E10.1 protein.
Length = 744
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 437 THKQIVCKQSQIDKQKCPLQ 378
+++ C QS IDK+ CP Q
Sbjct: 725 SYRNFYCNQSHIDKESCPYQ 744
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
C49C3.4 protein.
Length = 1566
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 143 VHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWF 271
+ K M FL+Q Y + + + F+P F+ S T I W+
Sbjct: 1281 IAKAAMTTGGFLIQSYITDDVKGHLDTQFIPDFLQSSTSIAWY 1323
>AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical
protein F39E9.12 protein.
Length = 550
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 134 LLLVHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPP 277
L++V ++L SFL + + FN + LP+FI + +I++PP
Sbjct: 305 LIIVLTGLIILGSFLAAVDFIFNNFYSIVIFTLPVFI--LIAVIFYPP 350
>Z98853-1|CAB57901.1| 262|Caenorhabditis elegans Hypothetical
protein R08A2.1 protein.
Length = 262
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 2 AGIRHEAIFGPETAAGDGEPVDDPSP 79
AG+ ++A+FGP G+G P P+P
Sbjct: 91 AGLNNDAVFGP--GGGEGGPPRAPAP 114
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 292 HYKCNVIHK*CDVQQT*KCYLHCP--KPSC--SCKGHFCLSIC-DCLHTIC 429
+Y CN+ CD Q T +CY P P+C +C+ + C D T+C
Sbjct: 826 NYNCNLP---CDQQCTQQCYHQAPTCAPACASACEAQCPVVSCEDACQTVC 873
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 343 KCYLHCPKPSCSCKGHFCLSICDCL-HTICL*VYHSPLRHC 462
KC L +P C+C+ H C +T C +Y P +C
Sbjct: 152 KCQLKPQEPLCNCQPHEICHHGQCYPNTQCTSIYCEPGTYC 192
>U58758-14|AAB93433.2| 842|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 14 protein.
Length = 842
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 137 VRFSMKFVNSVAFSAHGMEKVKGHRQVLHRLLLSQDRILPRAEFL 3
VR S +N + H ++ ++G R +LH + + ++ + EFL
Sbjct: 315 VRESEAKINQIIKLMHTLKVIQGIRTLLHSAKMKSNILIEKTEFL 359
>U58754-8|AAK72082.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 13 protein.
Length = 325
Score = 26.6 bits (56), Expect = 8.9
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +2
Query: 146 HKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFP----PKDNSNTTNAMLF 313
H +L+SF + Y + P L L IF+ ++ F +D+ + +L
Sbjct: 102 HSLWSLLLSFSYRCYILYKPAPTRPVLVLIIFLIYTPSLLQFVSFLWAQDDPDEMREILT 161
Query: 314 INSVMSNRLKNVIYIAQSLAVVVRDIFVYLFVTVCIQSVYEYITVL 451
+ N ++ +Y +++ + +F L +T+ I VY I +L
Sbjct: 162 KHFPAYNLTEHTVYGTKNI-ICFSALFTILHMTLPITPVYICILIL 206
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 99 LCARDGKGEGSSTGSPSPAAVSGPN 25
+C KGE STG P P GP+
Sbjct: 212 VCEPVQKGEPGSTGEPGPVGPPGPS 236
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 99 LCARDGKGEGSSTGSPSPAAVSGPN 25
+C KGE STG P P GP+
Sbjct: 212 VCEPVQKGEPGSTGEPGPVGPPGPS 236
>AF178755-1|AAD52669.1| 842|Caenorhabditis elegans HIM-14 protein
protein.
Length = 842
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 137 VRFSMKFVNSVAFSAHGMEKVKGHRQVLHRLLLSQDRILPRAEFL 3
VR S +N + H ++ ++G R +LH + + ++ + EFL
Sbjct: 315 VRESEAKINQIIKLMHTLKVIQGIRTLLHSAKMKSNILIEKTEFL 359
>AF040656-2|ABC71795.1| 206|Caenorhabditis elegans Hypothetical
protein Y8G1A.1b protein.
Length = 206
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 2 AGIRHEAIFGPETAAGDGEPVDDPSP 79
AG+ ++A+FGP G+G P P+P
Sbjct: 33 AGLNNDAVFGP--GGGEGGPPRAPAP 56
>AF040656-1|AAB95048.2| 234|Caenorhabditis elegans Hypothetical
protein Y8G1A.1a protein.
Length = 234
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 2 AGIRHEAIFGPETAAGDGEPVDDPSP 79
AG+ ++A+FGP G+G P P+P
Sbjct: 61 AGLNNDAVFGP--GGGEGGPPRAPAP 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,475
Number of Sequences: 27780
Number of extensions: 240450
Number of successful extensions: 888
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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