Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0558
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   2.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/38 (21%), Positives = 15/38 (39%)
 Frame = +2

Query: 188 YYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTN 301
           Y S + +   + +  P+F  ++    WF     S   N
Sbjct: 417 YNSVSKIDRASRIVFPLFFLAINVFYWFAYLSRSERIN 454


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 23  IFGPETAAGDGEPV 64
           I GP T  GD +PV
Sbjct: 367 IIGPTTCMGDHKPV 380


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  IPCAENATEFTNFIE 129
           +P  +NAT+ TNF E
Sbjct: 644 MPRVQNATDTTNFDE 658


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,670
Number of Sequences: 438
Number of extensions: 3060
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)