Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0558
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    31   0.39 
At1g06890.1 68414.m00732 transporter-related low similarity to S...    31   0.51 
At1g32190.1 68414.m03959 expressed protein                             28   2.7  
At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to...    27   6.3  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    27   8.4  
At4g16740.1 68417.m02528 terpene synthase/cyclase family protein...    27   8.4  

>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
           identical to cDNA CIP4.1 mRNA for COP1-interacting
           protein 4.1,  GI:13160649
          Length = 976

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 180 NKNDINTMSYLCTKSKVFNEVREFRG-VLCARDGKGEGSSTGSPSPAAVSGPNIA 19
           +KNDIN  +   T SK+    RE  G +L  + G GE +  G+    A S  ++A
Sbjct: 506 SKNDINKSTAATTTSKIIVNEREKMGDILVDKVGSGEATLIGADKIQAASDLHVA 560


>At1g06890.1 68414.m00732 transporter-related low similarity to
           SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine
           transporter {Homo sapiens}, SP|Q95YI5 UDP-sugar
           transporter UST74c {Drosophila melanogaster}, SP|Q18779
           UDP-sugar transporter sqv-7 {Caenorhabditis elegans};
           contains 8 predicted transmembrane domains
          Length = 357

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 233 VKINLLYLSKG*NYSIF--ATKMTLIPCRICVLRVRFSMKFVNSVAFS 96
           + I LL LS G N   F   TK+ +IPC + +  + F  KF   + FS
Sbjct: 84  ISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFRKKFSRKIQFS 131


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 358 CPKPSCSCKGHFCLSICDCLHTIC 429
           CPKPSCSC G  C   C C    C
Sbjct: 312 CPKPSCSC-GCGC-GDCGCFKCSC 333


>At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 369

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 309 NIAFVVFELSLGGNHMIFVTEYINIGKNKFV 217
           +IA VVF+    GNH+I +   +N+G +K V
Sbjct: 11  HIAMVVFQTGYAGNHVI-MRYALNLGVSKLV 40


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 59  PVDDPSPFPSRAQRTPRNSRTS 124
           PVD PSP PSR  + P+  + S
Sbjct: 479 PVDKPSPVPSRPVQKPQPPKES 500


>At4g16740.1 68417.m02528 terpene synthase/cyclase family protein
           similar to myrcene/ocimene synthase [GI:9957293];
           contains Pfam profile  PF01397: Terpene synthase,
           N-terminal domain; contains Pfam profile PF03936:
           Terpene synthase family, metal binding domain; identical
           to cDNA (partial mRNA) E-beta-ocimene synthase
           GI:30349137
          Length = 565

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 201 LKL*YICNKNDINTMSYLCTKSKVFNEV 118
           +KL ++C  N+IN + Y   + K FN +
Sbjct: 354 MKLCFLCLVNEINQIGYFVLRDKGFNVI 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,316
Number of Sequences: 28952
Number of extensions: 204081
Number of successful extensions: 560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)