Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0557
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0QJ92 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    37   0.34 
UniRef50_A5CF59 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  

>UniRef50_Q0QJ92 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=1; Xenos vesparum|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Xenos vesparum
          Length = 540

 Score = 37.1 bits (82), Expect = 0.34
 Identities = 23/81 (28%), Positives = 40/81 (49%)
 Frame = -2

Query: 352 FIFILFVWSLKEKNLYFCRIFYWK*IFVAITTIEVVIVWIMLRSFYQEAPSLFIYF*VVF 173
           FI  LF+W +     +FC  FY+K IF     + +++ ++ +++ Y ++ S+FI   +  
Sbjct: 420 FIGSLFMWMISLSLEFFCLSFYFKIIFYFFFMLGILLSYVNMKNLYFQS-SMFIGEVLNM 478

Query: 172 FLRDNKIIYNNAKLYFKLWFE 110
               N   YN  K   K W E
Sbjct: 479 NYYMNIFFYNFYKFIEKGWAE 499


>UniRef50_A5CF59 Cluster: Putative uncharacterized protein; n=1;
           Orientia tsutsugamushi Boryong|Rep: Putative
           uncharacterized protein - Orientia tsutsugamushi (strain
           Boryong) (Rickettsia tsutsugamushi)
          Length = 461

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 277 IFVAITTIEVVIVWIMLRSFYQEAPSLFIYF*VV-FFLRDNKIIYNNAKLYFKLWFEC 107
           +F+ +  I +++  I    +Y  A S+ + F  + +++ +NK + NN     +LW  C
Sbjct: 348 LFITVNIIGLLVKCINSIVYYNSAISISLIFMTISYYIANNKYVINNKLAILQLWLYC 405


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,123,570
Number of Sequences: 1657284
Number of extensions: 9347361
Number of successful extensions: 16794
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16789
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)