Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0557
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615...    28   6.9  
03_05_0863 + 28357585-28357635,28357782-28357851,28357987-283580...    28   6.9  

>07_03_1779 -
           29458889-29459249,29461107-29461283,29461374-29461573,
           29461673-29462752
          Length = 605

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 491 YSVRTREIIWRPLSKSSRSPKFIKY*VFTGDVIYLKGLYV 610
           +SVR R I WR ++K + + K + Y VF   + +L    +
Sbjct: 385 HSVRDRVIAWRSIAKHAANWKGVHYLVFNTYIWWLNNFQI 424


>03_05_0863 +
           28357585-28357635,28357782-28357851,28357987-28358054,
           28358757-28358818,28359491-28359572,28359658-28359891,
           28360210-28360338,28360430-28360491,28360779-28360896
          Length = 291

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 334 VWSLKEKNLYFCRIFYWK*IFVAITTIEVVIVWIML 227
           +WS      YF  IF W  IFVA T +     W+++
Sbjct: 177 LWSYTRHPNYFGEIFLWWGIFVASTPVLSGAEWLVI 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,539,394
Number of Sequences: 37544
Number of extensions: 211181
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)