Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0556
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   124   1e-29
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.43 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   4.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   6.9  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   6.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  124 bits (298), Expect = 1e-29
 Identities = 55/124 (44%), Positives = 81/124 (65%)
 Frame = +2

Query: 263 LHIAGLYGLYLCFTSAKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPLEILLMV 442
           L +  +YG++   T  +  T +FAI+ +     GITAG HRLWSH  YK K PLE  L  
Sbjct: 73  LPMIAIYGVFT--TPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAA 130

Query: 443 FNSIAFQNTIFTWVRDHRLHHKYTDTDADPHNATRGFFFSHIGWLLVRKHPMVKIAGKSL 622
             + AF+ +I  W RDHR HH+YTDTD DP+N  +GF+++H+GW+++ ++P  +  G+S 
Sbjct: 131 GGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP--RRIGRS- 187

Query: 623 DMSD 634
           D+SD
Sbjct: 188 DVSD 191


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 496 PVISHPCENGVLKSNTVEDHQQDLEGQFDFVT 401
           P I    EN + +SNTVE+  +++E QF+ V+
Sbjct: 297 PEIHESSENYLSRSNTVENEPENIEKQFESVS 328


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 578  TTSRCVRKKNLS*HYEGLHQC 516
            T +  V KKN+S H+EG+ +C
Sbjct: 1538 TDALLVLKKNISMHFEGVEEC 1558


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 SVFAIVLFFLGNFGITAGAHRLWSH 397
           SVF+IVL+FL N   TAG    W++
Sbjct: 632 SVFSIVLYFLTNLKRTAGG--FWTY 654


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 363 PKFPRKNNTIAKTDVANFAEVK 298
           P FP +N T  + +VANF  +K
Sbjct: 205 PAFPDENITALQKNVANFTSIK 226


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 617 SFQQFSPLDVFAPTTSRCVRKKN 549
           SF   +PL VFAP TSR +R  N
Sbjct: 201 SFDPLAPL-VFAPNTSRVLRVTN 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,350
Number of Sequences: 5004
Number of extensions: 52568
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)