Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0555
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    35   0.004
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    31   0.068
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   1.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   1.9  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   4.5  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   4.5  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   4.5  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   5.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   7.8  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +2

Query: 170 YAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKV 316
           Y+P  +P+   +  I+ ++ G  HT++L +   ++  G+N  GQCG +V
Sbjct: 22  YSPQIVPF---DRAIEKISCGGNHTLLLDEDSQLWACGDNRKGQCGYEV 67


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 31.1 bits (67), Expect = 0.068
 Identities = 23/65 (35%), Positives = 29/65 (44%)
 Frame = +2

Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESII 388
           EI  +A G  H I LT    VYT GN    Q GR++      +G       Q L  ++II
Sbjct: 227 EICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGL----TPQPLALKNII 282

Query: 389 DVCCG 403
            V  G
Sbjct: 283 SVGAG 287


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 182 YIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
           +IP   +  ++  ++    H++ LT    +Y+ G N  G+ G
Sbjct: 239 FIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNGSGELG 280


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 158 LLLSYAPIYI-PYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRK 313
           ++ +Y P+ +  +   ECE  A+   +      T+++ V T+ NNA  Q   K
Sbjct: 450 MVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEK 502


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 272 YTLGNNAYGQC-GRKVNVNEEYKGSMVTHNIQKLGKESIID 391
           + +GN   G   GR VNV  +YK   +  ++   GK  I D
Sbjct: 158 HLIGNERKGHVFGRLVNVQGDYKWEYLFVDVANYGKIIIFD 198


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 144 IILWNFCLAMHLFIYLT 194
           I  W+FC  + LF+YLT
Sbjct: 251 IYYWHFCDVVWLFLYLT 267


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 57  PQ*KLQSSTKFSVPVSIQIPKLDTIHHDEI 146
           P  KL SST  +      +PKL+   HD +
Sbjct: 84  PVNKLNSSTSLTTHQLASLPKLEVTDHDNV 113


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 190 LQELGV*D*SSGSGTCSHNNPDRQRR 267
           L+E+G  D S+  G  +HN P R++R
Sbjct: 17  LEEIGESDSSARRGKRNHNLPHREKR 42


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 141 EIILWNFCLAMHLFIYLTRAWSVRL 215
           E++ W+F  A +LF YL +  + RL
Sbjct: 142 EVVDWSFHAAAYLFKYLRKILAPRL 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,658
Number of Sequences: 5004
Number of extensions: 34144
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)