Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0555
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   4.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 358 VMSHHTTFILFIDIYFPTALTI 293
           ++S H  F+L ++I  PT+L +
Sbjct: 283 LISLHVFFLLVVEIIPPTSLVV 304


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 358 VMSHHTTFILFIDIYFPTALTI 293
           ++S H  F+L ++I  PT+L +
Sbjct: 283 LISLHVFFLLVVEIIPPTSLVV 304


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 233 RAHTIILTDKEGVYTLGN 286
           R   I LT+K G+  LGN
Sbjct: 330 RGERIQLTEKNGIDVLGN 347


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  ARGYKHSLWLRFHSSLNKNFRAAQSFRYRYQYR 111
           +  YK+S +  ++++ N N+    +  Y+  Y+
Sbjct: 86  SNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  ARGYKHSLWLRFHSSLNKNFRAAQSFRYRYQYR 111
           +  YK+S +  ++++ N N+    +  Y+  Y+
Sbjct: 86  SNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,215
Number of Sequences: 438
Number of extensions: 2664
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)