Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0555
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 42 1e-04
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 42 2e-04
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 41 3e-04
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 41 4e-04
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 40 5e-04
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 38 0.002
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 38 0.002
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 38 0.003
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 37 0.004
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 37 0.006
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 36 0.014
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 36 0.014
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 34 0.031
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 34 0.031
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 34 0.041
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 33 0.055
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 33 0.055
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 33 0.055
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 33 0.096
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 33 0.096
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 33 0.096
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 33 0.096
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 32 0.13
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 31 0.29
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 30 0.51
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 30 0.51
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 29 0.89
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 29 1.6
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy... 28 2.1
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ... 27 3.6
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi... 27 4.8
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 27 4.8
At1g02470.1 68414.m00197 expressed protein contains non-consensu... 27 4.8
At4g25580.1 68417.m03686 stress-responsive protein-related conta... 27 6.3
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ... 27 6.3
At5g52780.1 68418.m06550 expressed protein similar to unknown pr... 26 8.3
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 26 8.3
At1g01650.1 68414.m00083 protease-associated (PA) domain-contain... 26 8.3
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 42.3 bits (95), Expect = 1e-04
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Frame = +2
Query: 8 IRHEDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR----RNHPLELLLSYA 175
+ E TN+ACG FTV + ++E + G+ Q+G+ + ++ + L
Sbjct: 165 VSDEVTNVACGADFTVW-LSSTEGASILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQ 223
Query: 176 PIYIPYKSLECE-IKAVAAGRAHTIILTDKEG-VYTLGNNAYGQCGRKVNVNE 328
P SL E I VA G HT+ + DK G VYT G YG+ G + +E
Sbjct: 224 PRPKAIASLAGETIVKVACGTNHTVAV-DKNGYVYTWGFGGYGRLGHREQKDE 275
Score = 31.9 bits (69), Expect = 0.17
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESII 388
+I AAGR HT++++D G N YGQ G N + + + + + +
Sbjct: 111 KIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQLGLGSAKNGFVSVEVESTPLPCVVSDEVT 170
Query: 389 DVCCG 403
+V CG
Sbjct: 171 NVACG 175
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 41.5 bits (93), Expect = 2e-04
Identities = 30/107 (28%), Positives = 49/107 (45%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
+ACG+ TV+ +TS H V+ G Q+G + + N P + +E
Sbjct: 516 VACGHSLTVS--RTSRGH-VYTMGSTAYGQLGNPTAKGNFPER---------VEGDIVEA 563
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMV 349
++ +A G H +LT K +YT G GQ G NV + + ++V
Sbjct: 564 SVEEIACGSYHVAVLTSKSEIYTWGKGLNGQLGHG-NVENKREPAVV 609
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESI 385
IKA++ G H+ +TD G+ T G YGQCG N N++ + M ++ + ES+
Sbjct: 312 IKAISCGGRHSAAITDAGGLITFGWGLYGQCGHG-NTNDQLR-PMAVSEVKSVRMESV 367
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+++VAAG HTI ++ VY G N +GQ G
Sbjct: 364 MESVAAGLWHTICISSDGKVYAFGGNQFGQLG 395
Score = 27.9 bits (59), Expect = 2.7
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 26 NIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLE 205
++A G T+ S KV+ G N Q+G + +H E+L P + ++LE
Sbjct: 366 SVAAGLWHTIC---ISSDGKVYAFGGNQFGQLGTGT---DHA-EIL----PRLLDGQNLE 414
Query: 206 CE-IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+ KAV+ G H+ +L + + G N YGQ G
Sbjct: 415 GKHAKAVSCGARHSAVLAEDGQLLCWGWNKYGQLG 449
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 40.7 bits (91), Expect = 4e-04
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 185 IPYKSLE-CEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNI 361
+P + L+ + +AAG H+ LTDK VY G +G+ G N + MV +
Sbjct: 240 VPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDN---DKSSKMVPQKV 296
Query: 362 QKLGKESIIDVCCG 403
L +E II V CG
Sbjct: 297 NLLAEEDIIQVSCG 310
Score = 31.5 bits (68), Expect = 0.22
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRK 313
+I A G H + + D+ Y G N YGQCG +
Sbjct: 92 KITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
++ +A G H + L + + GNN YGQ G
Sbjct: 198 VRLIAVGAFHNLALEEDGRLLAWGNNEYGQLG 229
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 40.3 bits (90), Expect = 5e-04
Identities = 29/98 (29%), Positives = 49/98 (50%)
Frame = +2
Query: 14 HEDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPY 193
H T +ACG T+ +E +VF TG+N Q+G S ++H ++ P+ +
Sbjct: 82 HSITAVACGGAHTLF---LTETRRVFATGLNDCGQLGV-SDVKSHAMD------PLEV-- 129
Query: 194 KSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
L+ +I ++AG H+ +T +Y G N+ GQ G
Sbjct: 130 SGLDKDILHISAGYYHSAAITVDGELYMWGKNSSGQLG 167
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+KAVAA + HT+I T+ VYT G+N GQ G
Sbjct: 247 VKAVAAAKHHTVIATEGGDVYTWGSNREGQLG 278
Score = 33.1 bits (72), Expect = 0.072
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 197 SLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
SL+ +I AV+A HT +++D V+T G N GQ G
Sbjct: 293 SLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLG 329
Score = 30.7 bits (66), Expect = 0.39
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 71 SEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTII 250
S+ +VF G N + Q+GY + +Y+P + Y + A+A+ + HT++
Sbjct: 312 SDCGEVFTWGCNKEGQLGYGTSNSAS------NYSPRLVDYLKGKV-FTAIASSKYHTLV 364
Query: 251 LTDKEGVYTLGN 286
L + VYT G+
Sbjct: 365 LRNDGEVYTWGH 376
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 206 CEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
C IK V+A + H++ ++ VYT G G+ G
Sbjct: 186 CFIKLVSAAKFHSVAISTHGEVYTWGFGRGGRLG 219
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+KAVAA + HT+I T+ VYT G+N GQ G
Sbjct: 244 VKAVAAAKHHTVIATEGGDVYTWGSNREGQLG 275
Score = 33.1 bits (72), Expect = 0.072
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 197 SLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
SL+ +I AV+A HT +++D V+T G N GQ G
Sbjct: 290 SLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLG 326
Score = 30.7 bits (66), Expect = 0.39
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 71 SEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTII 250
S+ +VF G N + Q+GY + +Y+P + Y + A+A+ + HT++
Sbjct: 309 SDCGEVFTWGCNKEGQLGYGTSNSAS------NYSPRLVDYLKGKV-FTAIASSKYHTLV 361
Query: 251 LTDKEGVYTLGN 286
L + VYT G+
Sbjct: 362 LRNDGEVYTWGH 373
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 206 CEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
C IK V+A + H++ ++ VYT G G+ G
Sbjct: 183 CFIKLVSAAKFHSVAISTHGEVYTWGFGRGGRLG 216
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 221 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESIIDVCC 400
VA G + T+ LT VYT+G+ YGQ G N G + T KL K + ++ C
Sbjct: 557 VACGHSLTVALTTSGHVYTMGSPVYGQLG-----NPHADGKVPTRVDGKLHKSFVEEIAC 611
Query: 401 G 403
G
Sbjct: 612 G 612
Score = 32.7 bits (71), Expect = 0.096
Identities = 26/93 (27%), Positives = 43/93 (46%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
+ACG+ TVA T+ H V+ G Q+G +P + + P + K +
Sbjct: 557 VACGHSLTVAL--TTSGH-VYTMGSPVYGQLG--NPHADGKV-------PTRVDGKLHKS 604
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
++ +A G H +LT + VYT G + G+ G
Sbjct: 605 FVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLG 637
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 37.1 bits (82), Expect = 0.004
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 221 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESIIDVCC 400
VA G + T+ LT VYT+G+ YGQ G N N + K + + KL K+ + ++ C
Sbjct: 499 VACGHSLTVGLTTSGKVYTMGSTVYGQLG---NPNADGKLPCLVED--KLTKDCVEEIAC 553
Query: 401 G 403
G
Sbjct: 554 G 554
Score = 35.9 bits (79), Expect = 0.010
Identities = 29/100 (29%), Positives = 45/100 (45%)
Frame = +2
Query: 8 IRHEDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYI 187
I H +ACG+ TV + TS KV+ G Q+G +P + L P +
Sbjct: 492 IDHTFHRVACGHSLTVG-LTTSG--KVYTMGSTVYGQLG--NPNADGKL-------PCLV 539
Query: 188 PYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
K + ++ +A G H +LT + V+T G A G+ G
Sbjct: 540 EDKLTKDCVEEIACGAYHVAVLTSRNEVFTWGKGANGRLG 579
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 36.7 bits (81), Expect = 0.006
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +2
Query: 17 EDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYK 196
E N+ G + S+ + K+F G N +G HP E P + K
Sbjct: 36 EPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLG-------HPPETKTESTPSLV--K 86
Query: 197 SL-ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNE 328
SL +I A G H + + D+ Y G N YGQCG + + +E
Sbjct: 87 SLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDE 131
Score = 29.9 bits (64), Expect = 0.68
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
++ +A G H + L + ++ GNN YGQ G
Sbjct: 198 VRLIAVGAFHNLALKEDGTLWAWGNNEYGQLG 229
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 179 IYIPYK-SLECEIKAVAAGRAHTIILTDKEGVYTLG 283
I IP + + + ++ VAAG H+++LT + V+T G
Sbjct: 140 IVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWG 175
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 35.5 bits (78), Expect = 0.014
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 221 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESIIDVCC 400
VA G + T+ LT VYT+G+ YGQ G N G KL K + ++ C
Sbjct: 521 VACGHSLTVALTTSGHVYTMGSPVYGQLG-----NSHADGKTPNRVEGKLHKSFVEEIAC 575
Query: 401 G 403
G
Sbjct: 576 G 576
Score = 31.5 bits (68), Expect = 0.22
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGY-HSPRRNHPLELLLSYAPIYIPYKSLE 205
+ACG+ TVA T+ H V+ G Q+G H+ + P + K +
Sbjct: 521 VACGHSLTVAL--TTSGH-VYTMGSPVYGQLGNSHADGKT----------PNRVEGKLHK 567
Query: 206 CEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESI 385
++ +A G H +LT + VYT G + G+ G +V++ ++V + L + +
Sbjct: 568 SFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHG-DVDDRNSPTLV----ESLKDKQV 622
Query: 386 IDVCCG 403
+ CG
Sbjct: 623 KSIACG 628
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 35.5 bits (78), Expect = 0.014
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 310
+K +A G H+ ++TD + T G YGQCG+
Sbjct: 313 VKKIACGGRHSAVITDTGALLTFGWGLYGQCGQ 345
Score = 34.3 bits (75), Expect = 0.031
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+K ++ G HT ++TD+ V+ G N YGQ G
Sbjct: 419 VKTISCGARHTAVITDEGRVFCWGWNKYGQLG 450
Score = 32.3 bits (70), Expect = 0.13
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 200 LECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKE 379
L I+ VAAG HT + VY G N +GQ G + E + N++ + +
Sbjct: 361 LGIRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVK 420
Query: 380 SI 385
+I
Sbjct: 421 TI 422
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
I +VAAG HT+ L+D V+ G GQ G
Sbjct: 236 IVSVAAGGRHTLALSDIGQVWGWGYGGEGQLG 267
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 34.3 bits (75), Expect = 0.031
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 173 APIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+P + + L +I ++AAG AHTI LT VY+ G +G+ G
Sbjct: 5 SPTLLISEDLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLG 49
Score = 31.1 bits (67), Expect = 0.29
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
I VAAG H++ ++D V+ G N YGQ G
Sbjct: 75 IVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLG 106
Score = 28.3 bits (60), Expect = 2.1
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Frame = +2
Query: 164 LSYAPIYIPYKSLECE---IKAVAAGRAHTIILT-----------DKEGVYTLGNNAYGQ 301
LS+ I IP+ L+ + VA G H + L D +Y+ GNN +GQ
Sbjct: 180 LSFTSIPIPFPILDFHGRTVLKVACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQ 239
Query: 302 CGRKVNVNEEYKGSMVTHNIQKLGKESIIDVCCG 403
G + ++ T N QK G ++ D+ CG
Sbjct: 240 LGLGDGESRARPQTVETFN-QKSGL-TVYDIACG 271
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 34.3 bits (75), Expect = 0.031
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIG-------YHSPRRNHPLELLLSYAPIYI 187
++CG VA SE+ + G N Q+G +PR + L AP +
Sbjct: 171 VSCGTAHVVA---LSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELV 227
Query: 188 PYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQK 367
L C G HT L+D VYT G + GQ G V++ K ++ +
Sbjct: 228 KIMQLSC-------GEYHTAALSDAGEVYTWGLGSMGQLGH-VSLQSGDK-ELIPRRVVG 278
Query: 368 LGKESIIDVCCG 403
L S+ +V CG
Sbjct: 279 LDGVSMKEVACG 290
Score = 30.7 bits (66), Expect = 0.39
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 155 ELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRK 313
E+LL P+ + + +++ VA G +HT++ + + G N+YGQ +
Sbjct: 331 EMLLRNVPVLV----IPTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANE 379
Score = 30.3 bits (65), Expect = 0.51
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Frame = +2
Query: 44 GFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLECEIKA- 220
G S+ + ++ G N Q G RN +LL P +P + C A
Sbjct: 8 GEVAPSVSIPTKSAIYVWGYNQSGQTG-----RNEQEKLLR--IPKQLPPELFGCPAGAN 60
Query: 221 -----VAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESI 385
++ GR HT + ++ G N YGQ G V ++ +++L E +
Sbjct: 61 SRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKH-----PKKVKQLQSEFV 115
Query: 386 IDVCCG 403
V CG
Sbjct: 116 KFVSCG 121
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 33.9 bits (74), Expect = 0.041
Identities = 27/93 (29%), Positives = 43/93 (46%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
+ACG +A + KVF G + Q+G H N L L+S+ +
Sbjct: 53 LACGGAHVIA---LTSGGKVFTWGRGSSGQLG-HGDILNITLPKLVSFFD--------DS 100
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
I AAG +H+ ++D ++T GN ++GQ G
Sbjct: 101 VITQAAAGWSHSGFVSDSGCIFTCGNGSFGQLG 133
Score = 32.7 bits (71), Expect = 0.096
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +2
Query: 74 EQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTIIL 253
E+ +V+ G TD Q+G + ++ L LLS + P I +A G AH I L
Sbjct: 13 EEEQVWSWGAGTDGQLGT-TKLQDELLPQLLSLTSL--P------SISMLACGGAHVIAL 63
Query: 254 TDKEGVYTLGNNAYGQCG 307
T V+T G + GQ G
Sbjct: 64 TSGGKVFTWGRGSSGQLG 81
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVT-HNIQKLGKESI 385
++ +AAG H+ +T+ V T G +GQ G N N++ +V+ +I KE
Sbjct: 306 KVMQIAAGAEHSAAVTENGEVKTWGWGEHGQLGLG-NTNDQTSPELVSLGSIDLRTKE-- 362
Query: 386 IDVCCG 403
I V CG
Sbjct: 363 IKVYCG 368
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 33.5 bits (73), Expect = 0.055
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 203 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNE 328
E I+ +A G H++ LT + V+T G +G G KV E
Sbjct: 82 EHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRE 123
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 33.5 bits (73), Expect = 0.055
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 203 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNE 328
E I+ +A G H++ LT + V+T G +G G KV E
Sbjct: 151 EHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRE 192
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 33.5 bits (73), Expect = 0.055
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 221 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESIIDVCC 400
+A G + T+ LT V+T+G+ YGQ G N + G + KL E + ++ C
Sbjct: 510 IACGHSLTVGLTTSGQVFTMGSTVYGQLG-----NLQTDGKLPCLVEDKLASEFVEEISC 564
Query: 401 G 403
G
Sbjct: 565 G 565
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 32.7 bits (71), Expect = 0.096
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQ-------HKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYI 187
+ACG TVA ++ Q K+F G +++G H + + L +S
Sbjct: 1366 VACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLG-HGNKETYLLPTCVS------ 1418
Query: 188 PYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
++ +A G T+ LT V+T+G ++GQ G
Sbjct: 1419 --SLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLG 1456
Score = 32.3 bits (70), Expect = 0.13
Identities = 28/100 (28%), Positives = 46/100 (46%)
Frame = +2
Query: 8 IRHEDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYI 187
I + IACG+ FTVA T+ H VF G + Q+G S + L P +
Sbjct: 1421 IDYNFNQIACGHTFTVAL--TTSGH-VFTMGGTSHGQLG--SSNSDGKL-------PCLV 1468
Query: 188 PYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+ + ++ ++ G H +LT + V+T G + G+ G
Sbjct: 1469 QDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLG 1508
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 32.7 bits (71), Expect = 0.096
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
IACG+ FTVA T+ H VF G Q+G + P + + +
Sbjct: 477 IACGHTFTVAL--TTSGH-VFTMGGTAHGQLGN---------SISDGKLPCLVQDRLVGE 524
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
++ +A G H +LT + V+T G A G+ G
Sbjct: 525 FVEEIACGAHHVAVLTSRSEVFTWGKGANGRLG 557
Score = 31.9 bits (69), Expect = 0.17
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 221 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVN 319
+A G T+ LT V+T+G A+GQ G ++
Sbjct: 477 IACGHTFTVALTTSGHVFTMGGTAHGQLGNSIS 509
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 32.7 bits (71), Expect = 0.096
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +2
Query: 53 VASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC----EIKA 220
VA + ++ H F + Q+ +H L + PI+ P K +E K
Sbjct: 165 VAQVSATQNHSAF---VLQSGQVLTCGDNSSHCCGHLDTSRPIFRP-KLVEALKGTPCKQ 220
Query: 221 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
VAAG T+ L+ + YT G+N +GQ G
Sbjct: 221 VAAGLHFTVFLSREGHAYTCGSNTHGQLG 249
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
+A G FTV S + + G NT Q+G H + P+ ++ + P
Sbjct: 221 VAAGLHFTVF---LSREGHAYTCGSNTHGQLG-HGDTLDRPVPKVVEFLKTIGP------ 270
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNA 292
+ +AAG ++ + +T VY+ G+ +
Sbjct: 271 -VVQIAAGPSYVLAVTQDGSVYSFGSGS 297
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 200 LEC----EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
LEC + V+ G HTI++T + ++ G+N Q G
Sbjct: 424 LECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLG 463
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 32.7 bits (71), Expect = 0.096
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +2
Query: 53 VASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC----EIKA 220
VA + ++ H F + Q+ +H L + PI+ P K +E K
Sbjct: 165 VAQVSATQNHSAF---VLQSGQVLTCGDNSSHCCGHLDTSRPIFRP-KLVEALKGTPCKQ 220
Query: 221 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
VAAG T+ L+ + YT G+N +GQ G
Sbjct: 221 VAAGLHFTVFLSREGHAYTCGSNTHGQLG 249
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
+A G FTV S + + G NT Q+G H + P+ ++ + P
Sbjct: 221 VAAGLHFTVF---LSREGHAYTCGSNTHGQLG-HGDTLDRPVPKVVEFLKTIGP------ 270
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNA 292
+ +AAG ++ + +T VY+ G+ +
Sbjct: 271 -VVQIAAGPSYVLAVTQDGSVYSFGSGS 297
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 200 LEC----EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
LEC + V+ G HTI++T + ++ G+N Q G
Sbjct: 424 LECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLG 463
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 32.3 bits (70), Expect = 0.13
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +2
Query: 8 IRHEDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR-RNHPLELLLSYAPIY 184
I H+ ++CG+ TVA S V+ G + Q+G PR ++ + ++L
Sbjct: 509 IDHDFIKVSCGWTLTVA---LSISGTVYTMGSSIHGQLG--CPRAKDKSVNVVLGNLTRQ 563
Query: 185 IPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQ 364
+K +A+G H +LT VYT G GQ G +V + + S V ++
Sbjct: 564 F--------VKDIASGSHHVAVLTSFGNVYTWGKGMNGQLGLG-DVRD--RNSPVL--VE 610
Query: 365 KLGKESIIDVCCG 403
LG + + CG
Sbjct: 611 PLGDRLVESIACG 623
Score = 30.7 bits (66), Expect = 0.39
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEY 334
++++++ G H ++T + V+ GN G+ G KVN++ ++
Sbjct: 293 DVQSISLGAKHAALVTRQGEVFCWGNGNSGKLGLKVNIDIDH 334
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 31.1 bits (67), Expect = 0.29
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESIID 391
IK VAAG HT +T+ +Y G YG G + +V + G E +
Sbjct: 174 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDR-----LVPERVTSTGGEKMSM 228
Query: 392 VCCG 403
V CG
Sbjct: 229 VACG 232
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESII 388
++ VA G HTI ++ +YT G + YGQ G + + + ++ H ++ L I
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYGWSKYGQLG-----HGDLEDHLIPHKLEALSNSFIS 279
Query: 389 DVCCG 403
+ G
Sbjct: 280 QISGG 284
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRKVNVNE 328
I ++ G HT+ LT +Y G N +GQ G N+++
Sbjct: 278 ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQ 316
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
E AG H++ +T K VYT G N GQ G
Sbjct: 144 EKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQLG 176
Score = 27.9 bits (59), Expect = 2.7
Identities = 23/93 (24%), Positives = 36/93 (38%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
IA GY + +A V+ G ++G H R + Y + ++ L
Sbjct: 307 IAAGYCYLLALACQPNGMSVYSVGCGLGGKLG-HGSRTDE------KYPRVIEQFQILNL 359
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+ + VAAG H ++ V T G YG G
Sbjct: 360 QPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLG 392
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
E AG H++ +T K VYT G N GQ G
Sbjct: 44 EKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQLG 76
Score = 27.9 bits (59), Expect = 2.7
Identities = 23/93 (24%), Positives = 36/93 (38%)
Frame = +2
Query: 29 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYIPYKSLEC 208
IA GY + +A V+ G ++G H R + Y + ++ L
Sbjct: 207 IAAGYCYLLALACQPNGMSVYSVGCGLGGKLG-HGSRTDE------KYPRVIEQFQILNL 259
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+ + VAAG H ++ V T G YG G
Sbjct: 260 QPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLG 292
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 29.5 bits (63), Expect = 0.89
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 209 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 310
++ +A G H++IL + + G+N YGQ GR
Sbjct: 287 KVADIACGSDHSLILCHDGTLLSAGSNIYGQLGR 320
Score = 28.3 bits (60), Expect = 2.1
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +2
Query: 8 IRHEDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRRNHPLELLLSYAPIYI 187
I +IA G G ++A E++ + G N Q+G P N P E+
Sbjct: 332 ITESPISIAAGLGHSLAICNRGERN-ILSWGWNRSRQLGRGKPE-NLPREV--------- 380
Query: 188 PYKSLECEIKA-VAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+ + E A V+AGR H++ +T+K + G G+ G
Sbjct: 381 --EGFDGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLG 419
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 212 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 307
+KA++ G HT +T + ++T G+ +G G
Sbjct: 405 VKAISCGPWHTAFVTSEGKLFTFGDGTFGALG 436
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 275 TLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESIID 391
T+G + G C ++ N + KGS I++L + + D
Sbjct: 754 TIGETSGGSCTSSIHSNMDIKGSFNLKGIRRLSRLTSFD 792
>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
symporter (SUC2) nearly identical to sucrose-proton
symporter SUC2 [Arabidopsis thaliana] GI:407092
Length = 512
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 247 YCVSTSRCHCFNLTLQALVRYINRCIAKQK 158
YC + C ++TL +V +++ C K+K
Sbjct: 218 YCANLKTCFFLSITLLLIVTFVSLCYVKEK 247
>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 345
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 128 HSPRRNHPLELLLSYAPIYIPYKSLEC 208
HS HPL+LL PIYI K C
Sbjct: 180 HSHHSLHPLKLLTGLLPIYIDEKCRLC 206
>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 787
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 248 ILTDKEGVYTLGNNAYGQCGRKVNVNEEYKGSMVTHNIQKLGKESIIDV 394
I+TD G YTL +N Y + G + +M + N++K+ S I++
Sbjct: 701 IVTDDTGYYTLLSNIYAEEGEWEEF-RRLRSAMKSSNLKKVPGYSAIEI 748
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 138 RGEWYPIWESVLIPVPKTLCCSE 70
RG WY I +S + PVP T SE
Sbjct: 712 RGNWYRIDDSEIHPVPMTQVMSE 734
>At1g02470.1 68414.m00197 expressed protein contains non-consensus
splice sites;
Length = 220
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 94 YRYQYRFPNWIPFTTTKSSFGTSA*LCTYLYTLQELG 204
Y + FP W+PF ++ + S L YL L+ G
Sbjct: 97 YADREMFPKWMPFLSSVEAMEGSPDLSRYLVKLESFG 133
>At4g25580.1 68417.m03686 stress-responsive protein-related contains
weak similarity to Low-temperature-induced 65 kDa
protein (Desiccation-responsive protein 29B)
(Swiss-Prot:Q04980) [Arabidopsis thaliana]
Length = 626
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 17 EDTNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGY 127
E+ + A GYG TVAS+ T KV TG + +++ +
Sbjct: 428 ENPSSAGGYGSTVASMVTPVYEKVKETGASVMTKLPF 464
>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 538
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 128 HSPRRNHPLELLLSYAPIYIPYKSLECEIK 217
H NHPLE+LL P Y K C+ K
Sbjct: 61 HPCHPNHPLEVLLQGPPSYSDEKCSLCQRK 90
>At5g52780.1 68418.m06550 expressed protein similar to unknown
protein (pir||T04431)
Length = 168
Score = 26.2 bits (55), Expect = 8.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 115 PNWIPFTTTKSSFGTSA 165
P W+P+ TT +FG+SA
Sbjct: 114 PLWVPYLTTLVTFGSSA 130
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 26.2 bits (55), Expect = 8.3
Identities = 6/24 (25%), Positives = 17/24 (70%)
Frame = +2
Query: 323 NEEYKGSMVTHNIQKLGKESIIDV 394
N+E+ G+++ ++K+G + +I +
Sbjct: 185 NDEFVGNLIAETVEKIGPDGVISI 208
>At1g01650.1 68414.m00083 protease-associated (PA) domain-containing
protein contains protease associated (PA) domain,
Pfam:PF02225
Length = 491
Score = 26.2 bits (55), Expect = 8.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 69 LQSSTKFSVPVSIQI--PKLDTIHHDEIILWNFCLAMHLFIYLTRAWSVRLKQWQRDVL 239
L++ K + V++Q+ PK + E+ LW + L AW+VR + ++D L
Sbjct: 177 LENIVKSNAIVTLQLYSPKRPAVDVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKL 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,785,106
Number of Sequences: 28952
Number of extensions: 173381
Number of successful extensions: 531
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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