Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0554
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56730.1 68416.m06310 expressed protein contains Pfam profile...    27   6.2  
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    27   8.3  

>At3g56730.1 68416.m06310 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 166

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 168 DIYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQRFRIL 290
           ++Y++ ++      +G L L + V  I S   D+F+ FR+L
Sbjct: 83  EVYMIDLYSCVVKEDGPLNLMLFVGDISSRSKDFFRVFRLL 123


>At5g40820.1 68418.m04956 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            similar to Atr protein [Xenopus laevis] GI:11385422;
            contains Pfam profiles PF00454 Phosphatidylinositol 3-
            and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 1    WIPRAAGIRH--EDLYIFCW*FN 63
            W+P   G+RH  +D+YI C  F+
Sbjct: 2449 WVPHTRGLRHILQDIYISCGKFD 2471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,218,773
Number of Sequences: 28952
Number of extensions: 49761
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)