Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0553
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   2.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   4.9  
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    26   4.9  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    25   6.5  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   8.6  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 509 GHKKG*WEMAQNHLQAIPGS 568
           GH +G WE+A +HL+ I G+
Sbjct: 472 GHIEGVWEIAADHLRLISGA 491


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +3

Query: 312 GEWSQSTNILKRTGSSSARRK--LHNSNSW-DVTSNFASPP-AA*QRSLLYQCLGLLSRT 479
           G  S +T +     ++SA      +N+N+  +  +N A+   AA   S  Y      +  
Sbjct: 53  GATSVNTAVYNNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPANTN 112

Query: 480 TARYPNATALATKKADG 530
            A YPNA A  T  ADG
Sbjct: 113 AAYYPNAAATTTTNADG 129


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 396 PRNCCCVTFCGHYLIRSV*VYLLT-DSIRHLHVVCFKGICSTVLNCNR*VFTIFITF 229
           P NC C   C H    S   +  T D I H+H V   GI + +L C   V   FITF
Sbjct: 232 PSNCDCE--C-HAHFSSFPTHSGTPDDIEHIHSVYTMGIQTALLICLHKVPEGFITF 285


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 220 MLEKSNKNSENSTVTVE----NGATDTLKTNNMQVANGVSQQIYLNGPDQV 360
           M EK NK S  S+ +VE        +T+K+  ++ A+   Q+    G D+V
Sbjct: 20  MKEKKNKESNESSTSVEALNEKEMINTIKSPIIETADTADQENESEGSDEV 70


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -1

Query: 412 KFDVTSQELLLCNFLRALLDP 350
           +F+ + +E ++CNF R+++DP
Sbjct: 90  EFNRSIKEGIICNFTRSIIDP 110


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/73 (21%), Positives = 34/73 (46%)
 Frame = +1

Query: 235 NKNSENSTVTVENGATDTLKTNNMQVANGVSQQIYLNGPDQVVPAESYTTAIPGMSRQTS 414
           + + + S+ T    ++DT+ +NN+ V+  ++     + P     AE+   A+      +S
Sbjct: 288 SSSGDESSDTARQSSSDTISSNNVSVSVSLNTANEFSFPQGTFKAEN--EAVESEVAPSS 345

Query: 415 HRPPRLSSGASYI 453
             PP +    SY+
Sbjct: 346 STPPTVEE-ISYL 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,161
Number of Sequences: 5004
Number of extensions: 46786
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)