Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0553
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373... 30 1.2
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 29 2.9
06_03_1429 + 30100834-30102261 28 5.0
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 28 5.0
01_06_0022 + 25675400-25676146 28 6.6
11_06_0339 - 22488214-22488254,22488339-22488829,22490233-224904... 27 8.7
08_02_1494 + 27523016-27524040,27524971-27525118 27 8.7
06_03_0823 - 25026949-25027551,25027635-25027742,25027994-250281... 27 8.7
05_03_0464 + 14350391-14350520,14350609-14351342,14351421-143518... 27 8.7
04_03_0585 + 17570853-17571404 27 8.7
>10_08_0511 +
18435745-18436499,18436624-18436742,18436788-18437372,
18438534-18438667,18439128-18439148,18439656-18439739,
18439832-18440077,18440763-18440925,18441024-18441066,
18441392-18441773,18442212-18442267,18442351-18442417,
18442542-18442721
Length = 944
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 325 SQQIYLNGPDQVVPAESYTTAIPGMSRQTSHRPPRLSSGASYISAWDY*VELPPD 489
S++ Y +G +V P+ SY P +S GA Y+S Y ++P D
Sbjct: 752 SKREYPSGSSKVAPSASYERYAATTRLPNGELPSSISPGADYMSCRSYLDQVPTD 806
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 325 SQQIYLNGPDQVVPAESYTTAIPGMSRQTSHRPPRLSSGASYISAWDY*VELPPD 489
S++ Y +G +V P+ SY P +S GA Y+S Y ++P D
Sbjct: 568 SKREYPSGNSKVTPSASYDRYAATTRLPNRELPSSISPGADYMSRRSYLDQVPTD 622
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +3
Query: 330 TNILKRTGSSSARRKLHNSNSWDVTSNFASPPAA*QRSLLYQCLGLLSRTTARYPNATAL 509
T+ LK ++S R L + +VT ASPPA S+ L + R P A A
Sbjct: 24 TSTLKNASTASCR--LSAGHPIEVTLWEASPPALSHFSVHCPDLPSFNGNVLRVPEAIAA 81
Query: 510 ATKKADGK 533
A ADG+
Sbjct: 82 AVDDADGQ 89
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 242 IVKTQRLQLRTVLQIPLKQTTCKWRMESVNKYT*TDRIK*CPQKVTQQQFLGCHVKLR 415
+V Q QLRT Q+ +Q TC + RI+ CP+K + F C ++ R
Sbjct: 348 VVHVQEKQLRTASQVNHRQETCAQLDNQTVAGDSSGRIR-CPEKEQSEPF-SCTIRKR 403
>01_06_0022 + 25675400-25676146
Length = 248
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 361 VPAESYTTAIPGMSRQTS-HRPPRLSSGASYISAW 462
V +SY +PG S +S RPPR S I+ W
Sbjct: 110 VSPDSYCVWVPGSSPASSPSRPPRKSGSTGSIARW 144
>11_06_0339 -
22488214-22488254,22488339-22488829,22490233-22490405,
22492232-22492287,22492814-22492997,22494045-22494078,
22494326-22494390,22494710-22494843,22495066-22495201
Length = 437
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 321 SQSTNILKRTGSSSARRKLHNSNSWDVTSNFASPPAA*QRSLLYQCLGLLSRT 479
++S ++K G+ S RR+ H+S ++ T N SP R + + G + T
Sbjct: 212 TRSIGLMKSYGNGSKRRRRHHSTAYS-TGNGKSPSDRRSRQTIQRIAGFVWST 263
>08_02_1494 + 27523016-27524040,27524971-27525118
Length = 390
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = +1
Query: 421 PPRLSSGASYISAWDY*VE------LPPDILTLQHWPQKRL 525
P RLS GA I A+D E LPP+ T + W +K++
Sbjct: 232 PDRLSGGAEDIFAFDVKTETWRLIGLPPEATTEKRWARKKV 272
>06_03_0823 -
25026949-25027551,25027635-25027742,25027994-25028107,
25028200-25028309,25028432-25028520,25028637-25028833,
25028961-25029122,25029255-25029373,25029488-25029541,
25029687-25029769,25029894-25029982,25030105-25030257,
25030373-25030465,25032070-25032136,25032238-25032350,
25033466-25033561,25034415-25034594
Length = 809
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 179 KHTLDSTNLTFTLN*NHKFVRNVTISSSRGLTP 81
K+TLDST+ F N N NVT+ + L P
Sbjct: 352 KYTLDSTSACFINNRNDNMDVNVTLDGTTHLLP 384
>05_03_0464 +
14350391-14350520,14350609-14351342,14351421-14351882,
14351964-14352796,14352879-14352948,14352964-14353049,
14353129-14353429
Length = 871
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 117 KRHYQQFAWLDPA*VEARQTVIMDYCDR 34
+RH Q +LDP+ V T ++DY +R
Sbjct: 727 RRHGNQVGFLDPSMVNESSTEVVDYVNR 754
>04_03_0585 + 17570853-17571404
Length = 183
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 465 IPGTDIGGSAAKPRGAMRSLT*HPRNCCC 379
+PG G P GA+RS T H CC
Sbjct: 20 LPGLSRGDGECNPSGAIRSSTTHRCQDCC 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,952
Number of Sequences: 37544
Number of extensions: 324050
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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