Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0553
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7) 33 0.24
SB_7991| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_54915| Best HMM Match : CD225 (HMM E-Value=6.7) 31 0.96
SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0) 31 0.96
SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0) 30 1.3
SB_32566| Best HMM Match : SNARE (HMM E-Value=0.00035) 29 2.2
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0) 29 2.9
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_59381| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 465 LLSRTTARYPNATALATKKADGKWHKITYKQYQDRVRIIAKAFLKLG 605
LL R TA PN AL + G +T+K+Y+D+ + IA L+LG
Sbjct: 9 LLDRHTAECPNKEALVYRDEKGNRKSLTFKEYKDQSQAIAARLLELG 55
>SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)
Length = 513
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +3
Query: 465 LLSRTTARYPNATALATKKADGKWHKITYKQYQDRVRIIAKAFLKLG 605
LL +++PN A+ + + +T+++Y+D+ R++A +LG
Sbjct: 295 LLDHHASKFPNKEAIIYRDENNNRKSLTFQEYRDQSRVLAAKLTELG 341
>SB_7991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 468 LSRTTARYPNATALATKKADGKWHKITYKQYQDRVRIIAKAFLKLG 605
L + YP+ AL + + IT+KQYQ R +A L+LG
Sbjct: 27 LDEQASMYPDKEALVYRDEHFRRKTITFKQYQQRSHALAARLLELG 72
>SB_54915| Best HMM Match : CD225 (HMM E-Value=6.7)
Length = 149
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 519 KADGKWHKITYKQYQDRVRIIAKAFLKL 602
K + +W TY +Y + VRI AK+F+++
Sbjct: 4 KRNDQWQHWTYSEYYEEVRIAAKSFIEV 31
>SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 569
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 465 LLSRTTARYPNATALATKKADGKWHKITYKQYQDRVRIIAKAFLKLG 605
LL A+ PN AL + G +T+++Y+D+ + +A L+ G
Sbjct: 23 LLDHHAAKCPNKEALIYRDDSGNRTALTFREYKDQSQALAAGLLEKG 69
>SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 465 LLSRTTARYPNATALATKKADGKWHK--ITYKQYQDRVRIIAKAFLKLG 605
LL A P+ A+ + G H+ IT+KQYQ++ + +A L+LG
Sbjct: 20 LLDEQAALRPDKEAIVYRDETGYNHRKSITFKQYQEQSQCLAIMLLELG 68
>SB_32566| Best HMM Match : SNARE (HMM E-Value=0.00035)
Length = 554
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 219 RNLLKYSGTRVIS*AHFGFHEFDIHV 142
R+L+KY GT I FG +EF +HV
Sbjct: 334 RDLVKYEGTINIPPIFFGVYEFTVHV 359
>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 948
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 337 YLNGPDQVVPAESYTTAIPGMSRQTSHRPPRLSSGASYISA 459
+ +GPD V P + TT + T+++PP +S +S ++A
Sbjct: 602 HCDGPDGVAPGNTCTTQTSLTNISTTNQPPHISVVSSSLAA 642
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = +1
Query: 250 NSTVTVENGATDTLKTNNMQVANG-VSQQIYLNGPDQVVPAE---SYTTAIPGMSRQTSH 417
++T T E +T+T T N+ NG + I NG DQ+ ++ + T + P +
Sbjct: 181 STTYTPEAHSTET-STQNVSQHNGHIDSTISTNGDDQLCQSDTSGASTPSAPILVNGFQE 239
Query: 418 RPPRLSSGASYISAWDY*VELPPDILTLQHWPQKRL 525
PR S S W + P +W + +
Sbjct: 240 SSPRTSDSQSDQKPWSSEIRTPGSYNGAVNWDEMEI 275
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 548 LQAIPGSCQNNSKSFLETGS 607
L PG C NN KS L TGS
Sbjct: 208 LPRFPGECLNNVKSLLTTGS 227
>SB_59381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 256 TVTVENGATDTLKTNNMQVANGVSQQIYLNG 348
T+TVENG ++ T+ Q + S Q Y NG
Sbjct: 110 TITVENGGSEERPTSKCQEQHMASIQPYKNG 140
>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1322
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 277 ATDTLKTNNMQVANGVSQQIYLNGPDQVVPAESYTTAIPGMSRQTSHRPPRL 432
A+D KT + A + Q + D +VPAES T + RPP L
Sbjct: 863 ASDPEKTQDEAAAPATALQEHTISEDPLVPAESSTKTEEPSPKTGEKRPPGL 914
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,631,542
Number of Sequences: 59808
Number of extensions: 380706
Number of successful extensions: 1138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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