Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0553
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    28   5.9  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    28   5.9  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical
           protein Y45F10A.7a protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 164 NPKCAYEITRVPEYFSKLRCLKKVIKIVKTQRLQLRTVLQIPLKQTTCKWRM 319
           N KC  E+  VP+ +SKL    K  +++K  R++L+        +   +W M
Sbjct: 130 NNKCCDEVLWVPDEYSKLVRDMKNAQLIKNNRVKLKVYRNSFKGEELVEWLM 181


>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 297 KQHASGEWSQSTNILKRTGSSSARRKLHNSNSWDVTSNFASP 422
           K+H  G W+   N  K+ G S+    +HN   W  +  +  P
Sbjct: 202 KEHPLG-WTNDMNGEKQEGISTMDMTIHNGERWSASKAYVHP 242


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoformb protein.
          Length = 1420

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 190 SSS*VF**ITMLEKSNKNSENSTVTVENGATDT 288
           SSS  +  I +LE+SN+NS+N   + E+ ++D+
Sbjct: 91  SSSCTYRCIPILERSNRNSQNYLPSAESSSSDS 123


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoforma protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 190 SSS*VF**ITMLEKSNKNSENSTVTVENGATDT 288
           SSS  +  I +LE+SN+NS+N   + E+ ++D+
Sbjct: 91  SSSCTYRCIPILERSNRNSQNYLPSAESSSSDS 123


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 179 YEITRVPEYFSKLRCLKKVIKIVKTQRLQLRTVLQIPLKQTT 304
           YEI+ +P +  +LRCL  +I+    +   L   +Q+ LK T+
Sbjct: 505 YEISSIPRFEQRLRCL-NIIRSFHDRVEALVPFIQVVLKATS 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,560,087
Number of Sequences: 27780
Number of extensions: 270774
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)