Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0553
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.047
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 0.047
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 220 MLEKSNKNSENSTVTVENGATDTLKTNN 303
           +LE   +NS NST+T  N  T+    NN
Sbjct: 215 VLETCQRNSNNSTITAGNANTNASNNNN 242


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 141 KLKSQVCEKRHYQQFAWLDP 82
           K+K++    +H  Q  WLDP
Sbjct: 328 KVKNKKAGSKHLLQNTWLDP 347


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 244 YFYYFFQAS*FTKILRNSSNFI 179
           YFY F +   F   LR  SN I
Sbjct: 538 YFYLFMEMDRFAVTLRPGSNSI 559


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 244 YFYYFFQAS*FTKILRNSSNFI 179
           YFY F +   F   LR  SN I
Sbjct: 538 YFYLFMEMDRFAVTLRPGSNSI 559


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 241 NSENSTVTVENGATDTLKTNNMQVANGVSQQI 336
           +SEN TVT  N     +K  +++ A  + ++I
Sbjct: 132 SSENMTVTFANLGIQCVKKKDIEEALKIREEI 163


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 241 NSENSTVTVENGATDTLKTNNMQVANGVSQQI 336
           +SEN TVT  N     +K  +++ A  + ++I
Sbjct: 132 SSENMTVTFANLGIQCVKKKDIEEALKIREEI 163


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 348 TGSSSARRKLHNSNSWDVTSNFASP 422
           TG +       NS SW +T+N   P
Sbjct: 204 TGFALLVYDFRNSRSWRITNNLFYP 228


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 274 GATDTLKTNNMQVANGVSQQIY 339
           G T  +K NN+  + G+  +IY
Sbjct: 44  GQTPLIKLNNIPKSYGIKCEIY 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,481
Number of Sequences: 438
Number of extensions: 3183
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)